SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142259

Length: 1237 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene142259 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH	-	-	7.0e-40	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Afc, putative	-	-	4.849e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dual-specificity kinase.	EC:2.7.12.1	-	9.84e-24	-

Source	Gene names
Sma3	AFC1; AFC2; AFC3; AME2; AME3; AT3G53570; At3g53570; At4g24740; At4g32660; CHLREDRAFT_130101; F22K18.60; F4D11.140; F4P12_270; GSVIVT00015959001; GSVIVT00023119001; GSVIVT00030742001; LOC_Os12g27520; MICPUCDRAFT_3523; MICPUN_57150; Os01g0590900; Os01g08379

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24740.1	AFC2, AME1, FC2 FUS3-complementing gene 2 chr4:12754729-12757653 REVERSE LENGTH=427	0.0	51%
RefSeq	Arabidopsis thaliana	NP_194205.1	serine/threonine-protein kinase AFC2 [Arabidopsis thaliana]	0.0	51%
RefSeq	Populus trichocarpa	XP_002314585.1	predicted protein [Populus trichocarpa]	9.94922e-44	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN82

Fln msg:

Fln protein: MGACVAKYHRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLVFSGKDFGIVSRNEGVDVPLLVGTEPSTPCSDSSRSASSNIKPKEEGSRTGSPPWRSDDKDGHYKFELGENLTPRYKILSKMGEGTFGQVLECWDRKSKDLVAIKIVRGLQKYREAAMIEVDVLRKVGKYDRNGTRIW*

Protein Length: 182

Fln nts: _-_ATGGGGGCTTGTGTTGCAAAATATCACCGCCCTCCTCATATGCTCGATGAAAATCCCAGGAAGCGTCGAAAGTTAACGTCGTCCTGGGATGTTCTTCCTTCACAGCTTCAGGTCCAGCCAACACTGGTATTTTCTGGGAAGGATTTTGGTATTGTAAGTAGAAATGAAGGGGTGGACGTCCCTTTGTTAGTTGGGACAGAACCCTCCACCCCTTGTTCAGACAGTAGTCGGTCTGCCTCTTCCAATATAAAACCCAAAGAAGAGGGCTCACGGACTGGGTCACCACCATGGCGCAGTGACGACAAGGATGGCCACTACAAGTTCGAACTTGGAGAGAATTTGACGCCTCGATACAAAATACTCAGTAAGATGGGTGAAGGAACATTTGGTCAAGTGTTGGAATGTTGGGATCGAAAATCAAAGGATCTCGTGGCCATTAAAATCGTTCGTGGATTACAAAAGTATCGAGAGGCTGCAATGATAGAAGTCGATGTACTTCGTAAAGTTGGCAAATACGACAGAAATGGCACACGGATTTGGTAA___TGAAACATGCAGACAACTCAGCAGGTCTATTTATAGATTTGTTGCAGGGGCTTCTCAATTATGAACCCTCAGAACGCTTGAAAGCTTCAGAGGCTTTGAGACATCCATTTTTCAGAGAAGGTTCGAGAAGATATGATTATAGTGCATATACTTCATAAAGTATGGATCTGACTATCTGTTAGTCTCAGATTTGTATTTGAGGTCCAGAGTCGCTGTGAATCATTGTACAATGCACATTGAGGAATTTCCTTCTCAACTCCGGACAGCTGTCTAGCTGTAATGTGTTATATTATGGATTCTTGGTGAAGGGTTTGGTATACCATTCAGCAGTGGTGTTTAGGCGAAATGAGTCCTTACATCATCAGCAGGCTTTTTGTACATTAGAGAGTTCGTTGAAAATTGCCGATATATTGCATATAATGAAATATGCATCTGAGAATTGTTCAGATATCGGTTGGCTATCGGTGAATCGTAGATTGTATTTTGGGGCCCGAGTTGCTGTGAATGATTACACTGCTGTTTGGAATTTCTTTCGCAGTTTCTGGAACGGCAGAGCAGAATCCATTGCAGTGCTCGTCTGTTGTTTGAGCGAAATGGATCCTCACATCAGAATACTTGTACATGCAGATGTATAATAATAATATATTTTTTAATTCATGAATGAATTCAATATGAAATATTTGAGTGGTTCGAT

Fln Alignment:

AllPine_a_rep_c106269___ACVAKYHRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLVFSGKDFGIVSRN-EGVDVPLLVGTEPSTPCSDSSRSASSNIKPKEEGSRTGSPPWRSDDKDGHYKFELGENLTPRYKILSKMGEGTFGQVLECWDRKSKDLVAIKIVRGLQKYREAAMIEVDVLRKVGKYDRNGTRI
A9NN82________________ACVAKYRRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLIFTGKDFGIGSRNGEGQNAPLLAGAGVSIPASDCSRSTSSNIQSKEEGSRSGSPPWRSDDKDGHYMFEIGENLTSRYKILSKMGEGTFGQVLECWDRKSKDMVAIKIVRGLQKYREAAMIEVDVLRKVGKYDRNGTRI

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
665			12	87	0.992554
667			12	87	0.992554
668	87			12	0.992554
669	87		12		0.992554
671		12		87	0.992554
674	88	11			0.923564
676	11	88			0.923564
677	11			88	0.923564
679		88	11		0.923564
681		11	88		0.923564
685	11			88	0.923564
686		11		88	0.923564
707	88	11			0.991528
710	11	88			0.991528
712		11	88		0.991528
714	11		88		0.923564
715	11			88	0.923564
718		88		11	0.923564
719	88			11	0.923564
722			11	88	0.991528
723		88	11		0.991528
725	11		88		0.923564
726	11			88	0.923564
728			88	11	0.923564
732		12		87	0.992554
734		12	87		0.992554
735	12	87			0.992554
737	87			12	0.992554
738	85		14		0.993533
741		14		85	0.993533
747	85			14	0.993533
751	85	14			0.993533
752		85		14	0.993533
753	85	14			0.993533
756			85	14	0.993533
933	12		87		0.992554
971		25		75	1.0
984		28		71	1.0
1037	33			66	1.0
1070		60		40	1.0
1120		80		20	0.995493
1121		80	20		0.995493
1126	20			80	0.995493
1127		20		80	0.995493
1128	20		80		0.995493
1133	16			83	0.994517
1136	83			16	0.994517
1138	16	83			0.994517
1139		16		83	0.994517
1142	83	16			0.994517

SSRs (tot: 1)

Start position	End position	Sequence	Length
52	63	TAT TAT TAT TAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain