SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142246

Length: 1404 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene142246

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	100%
FL-Next	sp=Polyubiquitin 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	100%
Sma3	At5g03240	-	-	-

Source	Gene names
Sma3	AT5G03240;

Source	GOs	Term	Type	e value	Identity
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03240.1	UBQ3 polyubiquitin 3 chr5:771976-772896 REVERSE LENGTH=306	100%
RefSeq	Arabidopsis thaliana	NP_568112.2	polyubiquitin 3 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002316978.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q1EC66

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTATGGGGATATACTTGCTTGCGTTCTCCTCTCTTAGCGAAACGGTCACAGAGCGCTTCGTTCACAGGTCCTTTTCATTAGCTTTATACCTCTTTCAAG_-_ATGCAGATCTTCGTTAAAACTCTCACTGGTAAGACGATCACCCTCGAGGTTGAAAGTTCTGACACTATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCCGATCAACAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGAACACTTGCGGACTACAATATTCAAAAGGAATCCACCCTGCACCTTGTGCTCCGTCTGAGAGGTGGCATGCAGATATTTGTTAAAACCCTCACTGGGAAGACAATAACGTTGGAAGTTGAGAGCTCCGACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGCGGCTGATCTTTGCCGGAAAACAACTTGAAGACGGGCGAACGCTTGCTGATTACAATATACAAAAGGAATCTACTCTGCATCTCGTCCTCCGTCTAAGGGGTGGCATGCAGATTTTTGTCAAAACACTTACTGGCAAGACAATCACCTTAGAGGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGACGGACATTAGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGAGGCATGCAGATTTTTGTGAAAACTCTTACGGGAAAGACCATTACTTTGGAGGTGGAGAGCTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAGCAAAGGCTGATTTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGGCTGATTATAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAA___TTTAAAGGCCTTCTTGGAATAGCTTCGCAGGGTCTCCGTAAAAGATGTTTCTGTATGCATTTGTTAGTTTTTGATTTTCTGTTGTGGGATCCGTGATGTTTTTTGTCTGTGCACAGTAGAACGAAACCAACGTTGATGTCCTGGTTGGTACTGCAGTGGGAACTATGCAAGTAAATAATTCTCTTTGGATACAAAGACACTATACCATATGCATATTTTTTTTTAAAGATGAAGATTTCGAATGCATCTGTTATTGAAGTATTTCCACCAGTGGGAGAAGTTTTAAGAAAGTAGATTATTATCGTTTCTAACTTAAATGTAGAACGTTGTTTGTTCCCAAGTTATTTTATGAAGATTCGGTTGTGGGA

Fln Alignment:

AllPine_a_rep_c106236___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF
Q1EC66________________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF

SNPs (tot: 4)

Position	A %	C %	G %	Probability
810		87	12	0.992554
811	87		12	0.992554
1248	85		14	0.993533
1251	12		87	0.992555

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain