SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142235

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene142235
CTTTCAACCTCGTATACTTTCATAATTATTCTATGCATGAGAAGTGCGCAATATGCCATGAAGATAACCACCAGTCATGATCAAAGAGACAAGGGATACATGTCATAGCTGCAAGACGAGTCATGGAACGAGTTAGTGGGGTGAACATAGTACCTCATTTCTGTCGGATAGAGGACAAAGACTTTGAGTTCTACAGGGTTTTTGAACATCATTGTAATTGGTCTTGATTCACTTGAGGCTCGCAGCTATATC

Ace file of the UniGene sp_v3.0_unigene142235 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin activating enzyme E1 [Arabidopsis thaliana]	-	-	3.0e-09	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	NEDD8-activating enzyme E1 catalytic subunit	-	-	1.736e-09	-

Source	Gene names
Sma3	At5g19180; ECR1; GSVIVT00019920001; Os01g0271500; OsI_01345; OsJ_01249; P0693B08.15; POPTRDRAFT_768711; POPTRDRAFT_803920; RCOM_0913520; T24G5_80;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	small protein activating enzyme activity	GO:0008641	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	NEDD8 activating enzyme activity	GO:0019781	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	protein neddylation	GO:0045116	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin/SUMO-activating enzyme E1	IPR000011	-	-
Sma3	Ubiquitin-activating enzyme repeat	IPR000127	-	-
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	MoeZ/MoeB	IPR007901	-	-
Sma3	E2 binding	IPR014929	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ubiquitin-activating enzyme, E1, active site	IPR018074	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19180.1	ECR1 E1 C-terminal related 1 chr5:6453375-6455750 FORWARD LENGTH=454	2.0e-11	75%
RefSeq	Arabidopsis thaliana	NP_568370.1	ubiquitin-activating enzyme E1 C [Arabidopsis thaliana]	2.0e-11	75%
RefSeq	Populus trichocarpa	XP_002315531.1	predicted protein [Populus trichocarpa]	2.0e-13	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD0

Fln msg: Overlapping hits, possible frame ERROR between 206 and 205, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 302 aas, your sequence is shorter than subject: 84 - 448

Fln protein: FNLVYFHNYSMHEKCAICHEDNHQS*SKRQGIHVIAARRVMERVSGVNIVPHFCRIEDKDFEFYRVFxxIIVIGLDSLEARSYI

Protein Length: 85

Fln nts: CTTTCAACCTCGTATACTTTCATAATTATTCTATGCATGAGAAGTGCGCAATATGCCATGAAGATAACCACCAGTCATGATCAAAGAGACAAGGGATACATGTCATAGCTGCAAGACGAGTCATGGAACGAGTTAGTGGGGTGAACATAGTACCTCATTTCTGTCGGATAGAGGACAAAGACTTTGAGTTCTACAGGGTTTTTxxxxxxATCATTGTAATTGGTCTTGATTCACTTGAGGCTCGCAGCTATATC

Fln Alignment:

AllPine_a_rep_c106194___VIAARRVMERVSGVNIVPHFCRIEDKDFEFYRVFxIIVIGLDSLEARSYI
B8LQD0________________VVAARRVMERVSGVNIVPHFCRIEDKDSEFYRVFxIIALGLDSIEARSYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain