SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene142112

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene142112
CGGTCGTGACCTTGGCTGTCACTCATTTTTTGATGTTTCTGTTGGTGTATTTGATTCTGAAGTCCTAAGGCCACGCTGCCGTATTGCTCCTTCTGCATTTATACCAGATATGGGCAGTGACCATATCTATCCACTCGTAATCGCTGCAAATCCACATGTACCCAATCAGATTGCTGTAGGATTGACAGATGGAGGTGTTCATGTGATTGAGCCTT

Ace file of the UniGene sp_v3.0_unigene142112

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like [Oryza sativa Japonica Group] gb\|EAZ41606.1\| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group]	-	-	2.0e-14	60%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	Gene names
Sma3	GSVIVT00000315001; GSVIVT00014065001; GSVIVT00016938001; MtrDRAFT_AC147963g18v2; Os08g0162100; OsI_27917; OsJ_26138; P0577B11.132; PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_1115780; POPTRDRAFT_596940; POPTRDRAFT_736537; POPTRDRAFT_740856; POPTRDRAF

Source	GOs	Term	Type	e value	Identity
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15750.1	WSIP1, TPL Transducin family protein / WD-40 repeat family protein chr1:5415086-5420359 REVERSE LENGTH=1131	2.0e-17	55%
RefSeq	Arabidopsis thaliana	NP_563981.1	protein TOPLESS [Arabidopsis thaliana]	2.0e-17	55%
RefSeq	Populus trichocarpa	XP_002328986.1	predicted protein [Populus trichocarpa]	9.0e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 71 - 1131

Fln protein: GRDLGCHSFFDVSVGVFDSEVLRPRCRIAPSAFIPDMGSDHIYPLVIAANPHVPNQIAVGLTDGGVHVIEP

Protein Length: 72

Fln nts: CGGTCGTGACCTTGGCTGTCACTCATTTTTTGATGTTTCTGTTGGTGTATTTGATTCTGAAGTCCTAAGGCCACGCTGCCGTATTGCTCCTTCTGCATTTATACCAGATATGGGCAGTGACCATATCTATCCACTCGTAATCGCTGCAAATCCACATGTACCCAATCAGATTGCTGTAGGATTGACAGATGGAGGTGTTCATGTGATTGAGCCTT

Fln Alignment:

AllPine_a_rep_c105818___SFFDVSVGVFDSEVLRPRCRIAPSAFIP-DMGSDHIYPLVIAANPHVPNQIAVGLTDGGVHVIEP
Q94AI7________________SFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain