SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141952

Length: 507 nt

UniGene Fasta

>sp_v3.0_unigene141952
AAAGGAGTGTTCTCTGGGGACTTCCCTGACAACCCTCTCGTGCAATTTGATTATACTGCACAGAGCGTAAGCAGAGGCCTCTGGTCACCGGTGAAAGGCACAAGAGTAAAAGTTCTAAACTATAACACGACAGTGCAAGTAATTCTGCAGGGAACAAATATCTTTGCGGGTGAAAGCCATCCTATCCATCTGCATGGGTATGACTTTTACATTGTGGGATCAGGGTTTGGTAATTATAATTCAAAAACAGATGGTCAGAAGTTCAACTTGGTCGATCCTCCTATGCGCAACACTGTTAATGTTCCGGTCAACGGCTGGGCTGCCATAAGATTTGTCGCTGACAATCCTGGGGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACATGGGGTTTGGCCATGGTTTTGTGGTGAGCAATGGACCTAGTTCTCTTTCGAGTATCGAGTCGCCCCTGTAGATCTTCCGCAGTGCTAAGCACAAATTATACCATCGATACCTAGGAC

Ace file of the UniGene sp_v3.0_unigene141952

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	0.0	95%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	95%
Sma3	Laccase	-	-	9.80909e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.203e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.203e-37	%
Sma3	Metabolic pathways	01100		1.203e-37	%

Source	Gene names
Sma3	At2g29130; At2g30210; At2g38080; At2g40370; At3g09220; At5g01190; At5g03260; At5g05390; At5g07130; At5g09360; At5g48100; At5g58910; At5g60020; B1026C12.14; B1088C09.5; F15A17_290; F16M14.1; F3L24.9; F7J8.170; GLac1; GLac3; GLac90; GSVIVT00001780001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05390.1	LAC12 laccase 12 chr5:1594753-1597042 FORWARD LENGTH=565	70%
RefSeq	Arabidopsis thaliana	NP_196158.1	laccase 12 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002312186.1	laccase 90a [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AUI3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 139 - 570

Fln protein: KGVFSGDFPDNPLVQFDYTAQSVSRGLWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYNSKTDGQKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMVLW*

Protein Length: 140

Fln nts: AAAGGAGTGTTCTCTGGGGACTTCCCTGACAACCCTCTCGTGCAATTTGATTATACTGCACAGAGCGTAAGCAGAGGCCTCTGGTCACCGGTGAAAGGCACAAGAGTAAAAGTTCTAAACTATAACACGACAGTGCAAGTAATTCTGCAGGGAACAAATATCTTTGCGGGTGAAAGCCATCCTATCCATCTGCATGGGTATGACTTTTACATTGTGGGATCAGGGTTTGGTAATTATAATTCAAAAACAGATGGTCAGAAGTTCAACTTGGTCGATCCTCCTATGCGCAACACTGTTAATGTTCCGGTCAACGGCTGGGCTGCCATAAGATTTGTCGCTGACAATCCTGGGGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACATGGGGTTTGGCCATGGTTTTGTGGTGA___GCAATGGACCTAGTTCTCTTTCGAGTATCGAGTCGCCCCTGTAGATCTTCCGCAGTGCTAAGCACAAATTATACCATCGATACCTAGGAC

Fln Alignment:

AllPine_a_rep_c105427___KGVFSGDFPDNPLVQFDYTAQSVSRGLWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYNSKTDGQKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMV
Q9AUI3________________KGVFSGDFPDNPPVQFDYTAQNVSRGLWSPVKSTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYNPKTDPQKFNLVDPPMRNTVNVPVNGWAAIRFVADNPGAWVMHCHLDVHITWGLAMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain