SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141913

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene141913
AATGTCTTTTGTCGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAAATTGAGTGGGCACACAAAAGTTAGAACCCTGGGAAATGCATGCTTGTGGACATGATGCGCATAGCACCATGCTTCTCGGTGCTGCAAAGATACTGCAAGAACGCCAGCCCCTGTTACAGGGAACTGTTGTCCTAATTTTTCAACCAGCAGAGGAAGCAGGTGCTGGAGCAAAAAGAATGAATAAAAGATGGGGCATTAGAGAATGTGACATT

Ace file of the UniGene sp_v3.0_unigene141913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA-amino acid hydrolase ILR1-like 5 n=2 Tax=Arabidopsis RepID=ILL5_ARATH	-	-	4.0e-24	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Auxin conjugate hydrolase	-	-	2.399e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	1.09596e-41	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine biosynthesis	00300		1.09596e-41	%
Sma3	Fluorobenzoate degradation	00364		1.09596e-41	%
Sma3	Glutathione metabolism	00480		1.09596e-41	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.09596e-41	%
Sma3	Lipopolysaccharide biosynthesis	00540		1.09596e-41	%
Sma3	Sphingolipid metabolism	00600		1.09596e-41	%
Sma3	Metabolic pathways	01100		1.09596e-41	%
Sma3	Biosynthesis of secondary metabolites	01110		1.09596e-41	%
Sma3	Hippurate hydrolase.	EC:3.5.1.32	-	1.206e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylalanine metabolism	00360		1.206e-13	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		1.206e-13	%

Source	Gene names
Sma3	At1g44350; At1g51760; At1g51780; At5g54140; At5g56650; At5g56660; F19C24.29; F19C24.4; GR1; GSVIVT00015404001; GSVIVT00016617001; GSVIVT00028906001; GSVIVT00028908001; GSVIVT00034215001; IAR; IAR3; IAR31; IAR32; IAR33; IAR34; IAR35; IAR36; ILL1; ILL10; IL

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	IAA-Ala conjugate hydrolase activity	GO:0010179	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	auxin metabolic process	GO:0009850	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	Amidohydrolase	IPR017439	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51780.1	ILL5 IAA-leucine resistant (ILR)-like gene 5 chr1:19204602-19206453 FORWARD LENGTH=435	2.0e-26	74%
RefSeq	Arabidopsis thaliana	NP_175589.1	IAA-amino acid hydrolase ILR1-like 5 [Arabidopsis thaliana]	2.0e-26	74%
RefSeq	Populus trichocarpa	XP_002302231.1	iaa-amino acid hydrolase 9 [Populus trichocarpa]	2.0e-24	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVQ4

Fln msg: Overlapping hits, possible frame ERROR between 91 and 82, Distance to subject end: 244 aas, your sequence is shorter than subject: 89 - 476

Fln protein: MSFVALRADMDALPIQEEIEWAHKS*xxxxxHACGHDAHSTMLLGAAKILQERQPLLQGTVVLIFQPAEEAGAGAKRMNKRWGIRECDI

Protein Length: 90

Fln nts: AATGTCTTTTGTCGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAAATTGAGTGGGCACACAAAAGTTAGxxxxxxxxxxxxxxxCATGCTTGTGGACATGATGCGCATAGCACCATGCTTCTCGGTGCTGCAAAGATACTGCAAGAACGCCAGCCCCTGTTACAGGGAACTGTTGTCCTAATTTTTCAACCAGCAGAGGAAGCAGGTGCTGGAGCAAAAAGAATGAATAAAAGATGGGGCATTAGAGAATGTGACATT

Fln Alignment:

AllPine_a_c105311___FVALRADMDALPIQEEIEWAHKS*NxxxMHACGHDAHSTMLLGAAKILQERQPLLQGTVVLIFQPAEEAGAGAKRM
A9NVQ4________________FVALRADMDALPIQEAVEWEHKSKSxxxMHACGHDAHVTMLLGGAKILQQRQHLLQGTVILLFQPAEESGAGSKRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain