SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141861

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene141861
GAGGGAATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATTACAATATTCAGAAGGAATCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTTAGGTTTGGGTGTTATTTGTGGATAATAAATTCGGGTGATGTTCAGTGTTGTCGTATTTCTCACGAATAAATTGTGTTTATGTAGGTATGTGTTAGTGTTGTTTGTCTGTTTTAGACTCTCTTATGTTGTATTGGCTTCAACTGACCGACGAAGAAATACAACATAAGAGAGTCTAAACAGACAAACAACACTAACACATACCTACATAAACACAATTTATTCGTGAGA

Ace file of the UniGene sp_v3.0_unigene141861

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin (Fragment) n=1 Tax=Lemna minor RepID=Q6B444_LEMMI	-	-	2.0e-17	81%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%

Source	Gene names
Sma3	AT5G03240; At1g55060; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; FUBI1; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LOC_Os03g15370; MICPUCDRAFT_28921; MICPUN_60632; MtrDRAFT_AC149642g23v2; MubC5;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	Actin, conserved site	IPR004001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	3.0e-23	100%
RefSeq	Arabidopsis thaliana	NP_001190681.1	ubiquitin 11 [Arabidopsis thaliana]	1.0e-23	100%
RefSeq	Populus trichocarpa	XP_002323462.1	predicted protein [Populus trichocarpa]	6.0e-24	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: your sequence is shorter than subject: 45 - 229

Fln protein: EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 46

Fln nts: GAGGGAATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATTACAATATTCAGAAGGAATCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTTAG___GTTTGGGTGTTATTTGTGGATAATAAATTCGGGTGATGTTCAGTGTTGTCGTATTTCTCACGAATAAATTGTGTTTATGTAGGTATGTGTTAGTGTTGTTTGTCTGTTTTAGACTCTCTTATGTTGTATTGGCTTCAACTGACCGACGAAGAAATACAACATAAGAGAGTCTAAACAGACAAACAACACTAACACATACCTACATAAACACAATTTATTCGTGAGA

Fln Alignment:

AllPine_a_rep_c105164___EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Q7FPA4________________EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain