SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141790

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene141790
CGTCGTGACCTTGGCTGTCACTCATTTATGTGCTTTGGCATTGGATTTGTACTGAACATCATTGCCATATTCTATGGTTCTCTGGTGCCCTTGGTTTTGGCTCTATGGTGGTTGTCTTTGTAATCTGGGCATTTATATCTTTCCCTCTAGCACTCCTTGGAACGGTTGTTGGAAGGAATTGGAGTGGGGCTCCAAATAATCCTTGTCGTGTGAAGACCATTCCTCGCCCAATTCCA

Ace file of the UniGene sp_v3.0_unigene141790

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transmembrane nine 1 [Arabidopsis thaliana] gb\|AAL48237.1\|AF446365_1 At1g10950/T19D16_13 [Arabidopsis thaliana] gb\|AAK96857.1\| endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] gb\|AAL36263.1\| putative endomembrane protein EMP70 precusor is	-	-	1.0e-25	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	At1g10950; At1g10950/T19D16.13; GSVIVT00001846001; GSVIVT00035476001; LOC_Os11g07910; LOC_Os12g07670; MICPUCDRAFT_48250; MICPUN_106333; OJ1004_H01.22; Os02g0552000; Os11g0181100; Os12g0175700; OsI_07622; OsI_35351; OsI_37659; OsJ_07106; OsJ_33190; OsJ_354

Source	GOs	Term	Type	e value	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10950.1	TMN1, AtTMN1 transmembrane nine 1 chr1:3659322-3663622 FORWARD LENGTH=589	8.0e-28	92%
RefSeq	Arabidopsis thaliana	NP_563881.1	transmembrane nine 1 [Arabidopsis thaliana]	1.0e-27	92%
RefSeq	Populus trichocarpa	XP_002304054.1	predicted protein [Populus trichocarpa]	4.0e-28	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW90

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 151 aas, your sequence is shorter than subject: 78 - 585

Fln protein: S*PWLSLIYVLWHWICTEHHCHILWFSGALGFGSMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIP

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATGTGCTTTGGCATTGGATTTGTACTGAACATCATTGCCATATTCTATGGTTCTCTGGTGCCCTTGGTTTTGGCTCTATGGTGGTTGTCTTTGTAATCTGGGCATTTATATCTTTCCCTCTAGCACTCCTTGGAACGGTTGTTGGAAGGAATTGGAGTGGGGCTCCAAATAATCCTTGTCGTGTGAAGACCATTCCTCGCCCAATTCCA

Fln Alignment:

AllPine_a_rep_c104984___SGALGFGSMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIP
A9NW90________________TAALPFGTIVVILLIWTLVTSPLLVLGGIAGKNSKVEFQAPCRTTKYPREIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain