SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141731

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene141731
TTGAGATCGTCTTGCATAGTGTCGTTGTTGCAGACAAATATGTAAGACGATCTCAAAAGGCAGCTCTTTGGTTTGCCACAAAGATATCGAGATTCAGTTCGTGCGATAACCCCTGGGCTACCTCTATTTCTGTATAACTACACTACACACCAGCTCCATGGAATCTTTGAGGCTGCAAGTTTTGGAGGAACTAATATTGATCCAACGGCTT

Ace file of the UniGene sp_v3.0_unigene141731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=B2 protein emb\|CAA51078.1\| B2 protein [Daucus carota]	-	-	3.0e-23	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	N-rich protein	-	-	3.108e-13	-

Source	Gene names
Sma3	At3g27090; At5g42050; B1156H12.27-1; B1156H12.27-2; GSVIVT00031971001; OJ1057_B02.1; OSJNBa0024F24.12-1; OSJNBa0024F24.12-2; OSJNBa0030I14.2; Os01g0550300; Os05g0498700; Os05g0594100; OsI_02376; OsI_20486; OsI_21227; OsJ_02182; OsJ_19076; P0010D04.12; PHY

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27090.1	DCD (Development and Cell Death) domain protein chr3:9990020-9991407 FORWARD LENGTH=296	9.0e-29	85%
RefSeq	Arabidopsis thaliana	NP_189345.1	DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]	1.0e-28	85%
RefSeq	Populus trichocarpa	XP_002300107.1	predicted protein [Populus trichocarpa]	3.0e-31	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD32

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 70 - 294

Fln protein: LRSSCIVSLLQTNM*DDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGTNIDPTA

Protein Length: 71

Fln nts: TTGAGATCGTCTTGCATAGTGTCGTTGTTGCAGACAAATATGTAAGACGATCTCAAAAGGCAGCTCTTTGGTTTGCCACAAAGATATCGAGATTCAGTTCGTGCGATAACCCCTGGGCTACCTCTATTTCTGTATAACTACACTACACACCAGCTCCATGGAATCTTTGAGGCTGCAAGTTTTGGAGGAACTAATATTGATCCAACGGCTT

Fln Alignment:

AllPine_a_rep_c104827___M*DDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGTNIDPTA
D5AD32________________MQDDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGTNIDPTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain