SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141722

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene141722
AGTGCACAGTGTCATTCAAAACAATGCCGGATGACATTAGCAGCTCACCGAATACTTGTGCATCAATTCCATTCTCATTGTTTTGAATGACACTGTGCACTGGGTCACCTTCCATAGTGGCTATGATTTCGGGTACATGCTGAAGCTTCTAACGTGCCAGCAGTTGCCTCCAACACCTGCAGGCTTCTTCAGCTTGATTAAC

Ace file of the UniGene sp_v3.0_unigene141722

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp\|Q9SKZ2.2\|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb\|AAK93623.1\| putative CCR4-associated factor [Arabidopsis thaliana] gb\|AAD15397.2\| putative CCR4-associated fact	-	-	7.0e-13	76%
FL-Next	sp=Probable CCR4-associated factor 1 homolog 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	CCR4-NOT transcription complex subunit 7	-	-	3.922e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Poly(A)-specific ribonuclease.	EC:3.1.13.4	-	2.613e-13	-

Source	Gene names
Sma3	At1g80780; At2g32070; CAF1; CAF1-6; CAF1-7; CHLREDRAFT_184772; F22D22.18; F23A5.13; GSVIVT00017229001; GSVIVT00033749001; OJ1004_E04.12-1; OJ1695_H09.27-1; Os02g0796300; Os09g0416800; OsI_09281; OsI_31373; OsJ_08719; OsJ_29372; P0014G10.21-1; P0707C02.41-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease CAF1	IPR006941	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32070.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein chr2:13640829-13641656 REVERSE LENGTH=275	3.0e-18	76%
RefSeq	Arabidopsis thaliana	NP_565735.1	putative CCR4-associated factor 1-7 [Arabidopsis thaliana]	4.0e-18	76%
RefSeq	Populus trichocarpa	XP_002309667.1	predicted protein [Populus trichocarpa]	2.0e-20	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SKZ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 83 aas, your sequence is shorter than subject: 67 - 275

Fln protein: VHSVIQNNAG*H*QLTEYLCINSILIVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFSLIN

Protein Length: 68

Fln nts: AGTGCACAGTGTCATTCAAAACAATGCCGGATGACATTAGCAGCTCACCGAATACTTGTGCATCAATTCCATTCTCATTGTTTTGAATGACACTGTGCACTGGGTCACCTTCCATAGTGGCTATGATTTCGGGTACATGCTGAAGCTTCTAACGTGCCAGCAGTTGCCTCCAACACCTGCAGGCTTCTTCAGCTTGATTAAC

Fln Alignment:

AllPine_a_rep_c104799___IVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFSLIN
Q9SKZ2________________IVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMIS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain