SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141694

Length: 364 nt

UniGene Fasta

>sp_v3.0_unigene141694
TCAAGCTCTTGATCGTTTGGGTTGCCGTCTTCAGGGCAATTATGGATTTCAAGAGCAATTATCAAGGCATCGCACACTGATGAACCTTGTCGATGCTCCAAATGTCCATAAAGATGTCTTTGTTGCTGTCATTCAGTTTTGGTTGGAGATGTCAAAGTGGGTCATGGGTCATCGATTTGGTATGGGTGCATTCTTAGAGGAGATGTTAATAGCATCACAGTTGGGTCTGGAACAAATATACAGGACCACACCCTTGTCCACGTGGCAAAAACAAAAGTTAGTAGAAGTGCCCTTCCAACTATAATTGGCAGCAATGTTACCATTGGTAAGGAAATCCTCTCTTCTAATTCCTTCTATTCCAAAA

Ace file of the UniGene sp_v3.0_unigene141694

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Transcription factor APFI	-	-	2.785e-13	-

Source	Gene names
Sma3	At1g19580; At1g47260; At5g66510; CAG3; CHLREDRAFT_192148; F8G22.2; GSVIVT00014592001; GSVIVT00024901001; Gclp1; LOC_Os12g07220; MICPUCDRAFT_59458; MICPUN_91621; OJ1003_C06.118; OSJNBa0004B13.8; Os01g0283100; Os07g0642900; Os12g0169700; OsI_01428; OsI_2706

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	respiratory chain complex I	GO:0045271	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	0.0	-
Sma3	EGF-like region, conserved site	IPR013032	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19580.1	GAMMA CA1 gamma carbonic anhydrase 1 chr1:6774937-6777092 FORWARD LENGTH=275	3.0e-34	69%
RefSeq	Arabidopsis thaliana	NP_569036.1	gamma carbonic anhydrase 3 [Arabidopsis thaliana]	4.0e-35	74%
RefSeq	Populus trichocarpa	XP_002306878.1	predicted protein [Populus trichocarpa]	4.0e-38	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZX3

Fln msg: Separated hits, possible frame ERROR between 127 and 133, Distance to subject end: 132 aas, your sequence is shorter than subject: 121 - 273

Fln protein: QALDRLGCRLQGNYGFQEQLSRHRTLMNLVDAPNVHKDVFVxxxSVLVGDVKVGHGSSIWYGCILRGDVNSITVGSGTNIQDHTLVHVAKTKVSRSALPTIIGSNVTIGKEILSSNSFYSK

Protein Length: 122

Fln nts: TCAAGCTCTTGATCGTTTGGGTTGCCGTCTTCAGGGCAATTATGGATTTCAAGAGCAATTATCAAGGCATCGCACACTGATGAACCTTGTCGATGCTCCAAATGTCCATAAAGATGTCTTTGTTGCxxxxxxTTCAGTTTTGGTTGGAGATGTCAAAGTGGGTCATGGGTCATCGATTTGGTATGGGTGCATTCTTAGAGGAGATGTTAATAGCATCACAGTTGGGTCTGGAACAAATATACAGGACCACACCCTTGTCCACGTGGCAAAAACAAAAGTTAGTAGAAGTGCCCTTCCAACTATAATTGGCAGCAATGTTACCATTGGTAAGGAAATCCTCTCTTCTAATTCCTTCTATTCCAAAA

Fln Alignment:

AllPine_a_rep_c104731___QALDRLGCRLQGNYGFQEQLSRHRTLMNLVD-APNVHKDVFVAxxSVLVGDVKVGHGSSIWYGCILRGDVNSITVGSGTNIQDHTLVHVAKTKVSRSALPTIIGSNVTIG
A9NZX3________________QAIDRFGCRLQGNHGFQEQLSRHRTLMNIFEKAPSLHRDVFVAxxAAVMGDVKVGQGSSIWYGSVLRGDVNSIMVGSGTNIQDNTLVHVAKTNISGKVLPTIIGNKVTIG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain