SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141671

Length: 186 nt

UniGene Fasta

>sp_v3.0_unigene141671
CGTCGTGACCTTGGCTGTCACTCATTGGAAGAGCTGCTGGCAAATGGTAATTCTATTGAGGATCTGCCATTGTCACTCTGCAGGCTTGTTAACCTCAAGTCTCTTGCATTGAGTAACACAATGTGAAGCAGCTTCCACAAAATTTGCTCAAAGACTGCACCTCATTACAGAGTATTTGCTTCATGA

Ace file of the UniGene sp_v3.0_unigene141671

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine rich repeat-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZAD4_PICSI	-	-	2.0e-16	97%
FL-Next	tr=LAP4 protein; Zea mays (Maize).	-	-	0.0	67%

Source	Gene names
Sma3	LOC_Os03g11360; Os03g0212200; OsI_10500; OsJ_09890; RCOM_1470450;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B6T176

Fln msg: Separated hits, possible frame ERROR between 114 and 117, Distance to subject end: 48 aas, your sequence is shorter than subject: 62 - 262

Fln protein: RRDLGCHSLEELLANGNSIEDLPLSLCRLVNLKSLALxxHNVKQLPQNLLKDCTSLQSICFM

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGAAGAGCTGCTGGCAAATGGTAATTCTATTGAGGATCTGCCATTGTCACTCTGCAGGCTTGTTAACCTCAAGTCTCTTGCATTGAGxxxACACAATGTGAAGCAGCTTCCACAAAATTTGCTCAAAGACTGCACCTCATTACAGAGTATTTGCTTCATGA

Fln Alignment:

AllPine_a_rep_c104677___GCHSLEELLANGNSIEDLPLSLCRLVNLKSLALSxHNVKQLPQNLLKDCTSLQSI
B6T176________________GCSSLEEFQANGNAIEDVPASICNLVCLKSLSLNxNKIRQLPQNLLKDCTALQSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain