SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141618

Length: 186 nt

UniGene Fasta

>sp_v3.0_unigene141618
CGTCGTGACCTTGGCTGTCACTCATTATTTCTCCTCTTCTGATACTTGGGAGAAGAAGCATAACTGGAAGTTTCATCGGCAGCATGAAGGAAACACAGGAAGTTTTAGATTTATGTGCAGAGAAGAAGGTTTCATGCATGGTTGAGATTGTGGGTCTGGATTATATCAATACAGCCATGGAAAGGC

Ace file of the UniGene sp_v3.0_unigene141618

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable cinnamyl alcohol dehydrogenase 2 n=11 Tax=Pinaceae RepID=CADH2_PICAB	-	-	8.0e-12	85%
FL-Next	tr=Cinnamyl-alcohol dehydrogenase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	85%
Sma3	Cinnamyl alcohol dehydrogenase	-	-	4.381e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	5.423e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	5.423e-23	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.423e-23	%
Sma3	Metabolic pathways	01100	5.423e-23	%
Sma3	Biosynthesis of secondary metabolites	01110	5.423e-23	%

Source	Gene names
Sma3	At4g34230; CAD; CAD1; CAD14; CAD19; CAD2; CAD5; CAD6; CAD7; CAD8; F28A23.10; GSVIVT00019568001; GSVIVT00036661001; ZCAD1; cad;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34230.1	CAD5, ATCAD5, CAD-5 cinnamyl alcohol dehydrogenase 5 chr4:16386898-16388666 REVERSE LENGTH=357	2.0e-12	63%
RefSeq	Arabidopsis thaliana	NP_195149.1	cinnamyl alcohol dehydrogenase 5 [Arabidopsis thaliana]	2.0e-12	63%
RefSeq	Populus trichocarpa	XP_002313875.1	cinnamyl alcohol dehydrogenase [Populus trichocarpa]	2.0e-12	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5NDD6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 61 - 357

Fln protein: S*PWLSLIISPLLILGRRSITGSFIGSMKETQEVLDLCAEKKVSCMVEIVGLDYINTAMER

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTCTCCTCTTCTGATACTTGGGAGAAGAAGCATAACTGGAAGTTTCATCGGCAGCATGAAGGAAACACAGGAAGTTTTAGATTTATGTGCAGAGAAGAAGGTTTCATGCATGGTTGAGATTGTGGGTCTGGATTATATCAATACAGCCATGGAAAGGC

Fln Alignment:

AllPine_a_rep_c104556___GSFIGSMKETQEVLDLCAEKKVSCMVEIVGLDYINTAMER
Q5NDD6________________GSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain