SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141559

Length: 348 nt

UniGene Fasta

>sp_v3.0_unigene141559
CGTCGTGACCTTGGCTGTCACTCATTTCCCTTCTTATTGACACTGCTCTCAACAATATGCACTTCACTTGGTTCCGAGGTGCATATTTTGTGCTGTGGACTACAGTGTACATCATTTTCCAGTGGATTCTCCATGCATGCGTTTTGACTTGGTTTTCGGTGCCATATCCATTTCTTGAGCTCGCAAAGCCATTGGCTCCATTATGGTACTTTGGCTTGGCACTCTTGTGCGTCATATGCTATGGAATCTTTGCTTTGCTTATAGAGCTCAAGGGACGACTCTTCCCCAAATGGTTTGCTTATTCCTATCAAAGCTTGCACTATTATAAGTATTTCGAGTAAAAGTAGT

Ace file of the UniGene sp_v3.0_unigene141559

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP_transf_1 domain containing protein	-	-	4.0e-05	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	At2g47115; At5g62960; GSVIVT00002747001; GSVIVT00016057001; GSVIVT00020705001; GSVIVT00028186001; OsI_01507; OsJ_01408; POPTRDRAFT_230624; POPTRDRAFT_423394; POPTRDRAFT_552585; POPTRDRAFT_572554; POPTRDRAFT_776100; POPTRDRAFT_797856; RCOM_1344360; VITISV_

Source	GOs	Term	Type	e value	Identity
Sma3	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	0.0	-
Sma3	tryptophan biosynthetic process	GO:0000162	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 3	IPR000312	-	-
Sma3	Anthranilate phosphoribosyl transferase	IPR005940	-	-
Sma3	Glycosyl transferase, family 3, N-terminal	IPR017459	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62960.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukar	2.0e-30	55%
RefSeq	Arabidopsis thaliana	NP_201101.2	uncharacterized protein [Arabidopsis thaliana]	3.0e-30	55%
RefSeq	Populus trichocarpa	XP_002301538.1	predicted protein [Populus trichocarpa]	2.0e-32	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS29

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 113 - 359

Fln protein: S*PWLSLISLLIDTALNNMHFTWFRGAYFVLWTTVYIIFQWILHACVLTWFSVPYPFLELAKPLAPLWYFGLALLCVICYGIFALLIELKGRLFPKWFAYSYQSLHYYKYFE*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCCTTCTTATTGACACTGCTCTCAACAATATGCACTTCACTTGGTTCCGAGGTGCATATTTTGTGCTGTGGACTACAGTGTACATCATTTTCCAGTGGATTCTCCATGCATGCGTTTTGACTTGGTTTTCGGTGCCATATCCATTTCTTGAGCTCGCAAAGCCATTGGCTCCATTATGGTACTTTGGCTTGGCACTCTTGTGCGTCATATGCTATGGAATCTTTGCTTTGCTTATAGAGCTCAAGGGACGACTCTTCCCCAAATGGTTTGCTTATTCCTATCAAAGCTTGCACTATTATAAGTATTTCGAGTAA___AAGTAGT

Fln Alignment:

AllPine_a_rep_c104405___DTALNNMHFTWFRGAYFVLWTTVYIIFQWILHACVLTWFSVPYPFLELAKPLAPLWYFGLALLCVICYGIFALLIELKGRLFPKWFAYSYQSLH
C0PS29________________DSALNSMHFPWFRGAYFMLWTALYVIFQWIIHACGFSWW--PYPFLELSTAWAPLWYFALAILCIPCYGLFTLLIKGKERYFPKWFPHAYQNLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain