SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141393

Length: 287 nt

UniGene Fasta

>sp_v3.0_unigene141393
TACTATGGGGATTCTCGCAGCGGGAGCAACCCCAGCCAAAGAAGGATAACGTAGCAGCCATGGCCGCGTCCCTCGCAACAGGATCCGCGCTACAAGCCGCGGCCACGCTTCTCCAACCAACAAAGCTCAGCGTCACGCGTAGCTCCTCCAGGCTATCGTCCTCGTCCCCGCCGTGGCGCTCCCAGCCGGAGGTCGCGGTGACGAGGAAGAGCTGGTTAAGGAGAATATCAAGGACGTATCGGCGTCCAAGGGAACTATCACCCTCAGCGTCAGCAAGAGTAAGCCCG

Ace file of the UniGene sp_v3.0_unigene141393

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG	-	-	9.0e-08	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	OEC 33 kDa subunit	-	-	7.061e-30	-

Source	Gene names
Sma3	At3g50820; At5g66570; B1080D07.27; F18B3.100; GSVIVT00013467001; GSVIVT00014701001; K1F13.25; OEE1; Os01g0501800; OsI_02088; OsJ_01921; POPTRDRAFT_716206; POPTRDRAFT_813989; PSBO; PSBO1; PSBO2; PsbO; RCOM_0603960; VITISV_019248; VITISV_027630; ert12; psbO

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast thylakoid lumen	GO:0009543	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	oxygen evolving complex	GO:0009654	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	extrinsic to membrane	GO:0019898	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	poly(U) RNA binding	GO:0008266	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	photoinhibition	GO:0010205	Biological Process	-
Sma3	photosystem II assembly	GO:0010207	Biological Process	-
Sma3	regulation of protein dephosphorylation	GO:0035304	Biological Process	-
Sma3	photosystem II stabilization	GO:0042549	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbO, manganese-stabilising	IPR002628	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNZ6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 26 aas, your sequence is shorter than subject: 95 - 327

Fln protein: TMGILAAGATPAKEG*RSSHGRVPRNRIRATSRGHASPTNKAQRHA*LLQAIVLVPAVALPAGGRGDEEELVKENIKDVSASKGTITLSVSKSKP

Protein Length: 96

Fln nts: TACTATGGGGATTCTCGCAGCGGGAGCAACCCCAGCCAAAGAAGGATAACGTAGCAGCCATGGCCGCGTCCCTCGCAACAGGATCCGCGCTACAAGCCGCGGCCACGCTTCTCCAACCAACAAAGCTCAGCGTCACGCGTAGCTCCTCCAGGCTATCGTCCTCGTCCCCGCCGTGGCGCTCCCAGCCGGAGGTCGCGGTGACGAGGAAGAGCTGGTTAAGGAGAATATCAAGGACGTATCGGCGTCCAAGGGAACTATCACCCTCAGCGTCAGCAAGAGTAAGCCCG

Fln Alignment:

AllPine_a_rep_c103917___GGRGDEEELVKENIKDVSASKGTITLSVSKSKP
B8LNZ6________________GGRGDEEELVKENIKDVSASKGEITFSVSKSKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain