SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141385

Length: 477 nt

UniGene Fasta

>sp_v3.0_unigene141385
CGTCGTGACCTTGGCTGGGCTCCATCAGATTCAAAGCTGACAATCCAGGAGTGTGGTTTCTGCACTGCCATCTAGACGACCATTTAGCATGGGGATTGAATATGGTGTTCCTAGTGAGGAATGGTCGCGGTCCTTTGGCAACATTGGAGCCTCCCCCTGCAGACCTTCCCAAGTGCTAGATAGAGAGAGAAGGAAATATCAATAAGCATATCAAAATACTTCACGAGTACAAGGATCTGGACACATTGAGGGATCCTTATTGATTTAAAATCTACGGCCATTAGTGGCGTAGTTAAAATAAACTCAAACATGAAGGGCGAACTGTGTTTTTTATTCGTCGGACTGCAAATAGGCTAGGATTGTATTTTCTTCTGGTAAGGATTGTCATTTTGGGATATTGAATTCAAGTTAGTTTTTATTAAACTTTTTATAAGCATGAGATCTTTTTTATAATATAATTGGAAAATGAATTTTTAG

Ace file of the UniGene sp_v3.0_unigene141385

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI2_PINTA	-	-	3.0e-17	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Laccase	-	-	4.268e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	4.254e-31	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.254e-31	%
Sma3	Metabolic pathways	01100		4.254e-31	%

Source	Gene names
Sma3	At1g18140; At2g30210; At2g38080; At2g40370; At5g01190; At5g05390; At5g48100; At5g58910; At5g60020; B1088C09.5; F16M14.1; F7J8.170; GLac1; GLac3; GLac90; GSVIVT00006368001; GSVIVT00006374001; GSVIVT00008641001; GSVIVT00010239001; GSVIVT00017803001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01190.1	LAC10 laccase 10 chr5:72392-74612 FORWARD LENGTH=558	2.0e-21	67%
RefSeq	Arabidopsis thaliana	NP_195739.2	laccase 10 [Arabidopsis thaliana]	3.0e-21	67%
RefSeq	Populus trichocarpa	XP_002308209.1	laccase 1d, partial [Populus trichocarpa]	5.0e-21	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 59 - 570

Fln protein: S*PWLGSIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVRNGRGPLATLEPPPADLPKC*

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGGGCTCCATCAGATTCAAAGCTGACAATCCAGGAGTGTGGTTTCTGCACTGCCATCTAGACGACCATTTAGCATGGGGATTGAATATGGTGTTCCTAGTGAGGAATGGTCGCGGTCCTTTGGCAACATTGGAGCCTCCCCCTGCAGACCTTCCCAAGTGCTAG___ATAGAGAGAGAAGGAAATATCAATAAGCATATCAAAATACTTCACGAGTACAAGGATCTGGACACATTGAGGGATCCTTATTGATTTAAAATCTACGGCCATTAGTGGCGTAGTTAAAATAAACTCAAACATGAAGGGCGAACTGTGTTTTTTATTCGTCGGACTGCAAATAGGCTAGGATTGTATTTTCTTCTGGTAAGGATTGTCATTTTGGGATATTGAATTCAAGTTAGTTTTTATTAAACTTTTTATAAGCATGAGATCTTTTTTATAATATAATTGGAAAATGAATTTTTAG

Fln Alignment:

AllPine_a_rep_c103898___SIRFKADNPGVWFLHCHLDDHLAWGLNMVFLVRNGRGPLATLEPPPADLPKC
C0PRA7________________AIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain