SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141280

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene141280
GATAGTTGAGGCTTGAAGCTGGTCTTGTCTATATGGAATGACATGGAGCAGGACATAACACCTGTAGAGGCTGGCATTGCTTGGACCATCGGCAAGAGAAGACGGGCAGAGGGTGGATTCTTGGTGCTGAGGTCATCTAAACAGCTGGAGAGGGTCCTGCAAGGCACACAGGGGCTAGG

Ace file of the UniGene sp_v3.0_unigene141280

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminomethyltransferase n=1 Tax=Picea sitchensis RepID=D5A852_PICSI	-	-	2.0e-08	96%
FL-Next	sp=Aminomethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Glycine cleavage system T protein	-	-	6.269e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.1.2.1-	-	2.294e-25	-

Source	Gene names
Sma3	At1g11860; F12F1.30; GDCST; GDCT; GSVIVT00010970001; H0215F08.10; MA4_106O17.6; OSJNBa0053K19.11; Os04g0623800; OsI_17482; OsJ_16220; RCOM_0903840; gdcT1; gdcT2;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	glycine cleavage complex	GO:0005960	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	aminomethyltransferase activity	GO:0004047	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage system T protein	IPR006223	-	-
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A852

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 81 aas, your sequence is shorter than subject: 59 - 411

Fln protein: DS*GLKLVLSIWNDMEQDITPVEAGIAWTIGKRRRAEGGFLVLRSSKQLERVLQGTQGL

Protein Length: 60

Fln nts: GATAGTTGAGGCTTGAAGCTGGTCTTGTCTATATGGAATGACATGGAGCAGGACATAACACCTGTAGAGGCTGGCATTGCTTGGACCATCGGCAAGAGAAGACGGGCAGAGGGTGGATTCTTGGTGCTGAGGTCATCTAAACAGCTGGAGAGGGTCCTGCAAGGCACACAGGGGCTAGG

Fln Alignment:

AllPine_a_rep_c103624___NDMEQDITPVEAGIAWTIGKRRRAEGGFL
D5A852________________NDMEQDITPVEAGIAWTIGKRRRTEGGFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain