SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141212

Length: 881 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene141212

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome non-ATPase regulatory subunit 14 n=27 Tax=Chordata RepID=PSDE_HUMAN	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	26S proteasome regulatory subunit	-	-	9.354e-10	-

Source	Gene names
Sma3	26S-11; AJH2; At1g71230; At5g23540; CHLREDRAFT_24132; CSN5A; F3I17.12; GSVIVT00014791001; GSVIVT00036331001; MICPUCDRAFT_31106; MICPUN_107792; MQM1.19; OJ1118_F06.13; OJ1215_E11.13; OJ1215_E11.14; OSTLU_35481; Os01g0267200; Os05g0371200; Os06g0703600; Os0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	G2 phase of mitotic cell cycle	GO:0000085	Biological Process	-
Sma3	protein deneddylation	GO:0000338	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	negative regulation of photomorphogenesis	GO:0010100	Biological Process	-
Sma3	signalosome assembly	GO:0010387	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23540.1	Mov34/MPN/PAD-1 family protein chr5:7937772-7939339 FORWARD LENGTH=308	80%
RefSeq	Arabidopsis thaliana	NP_197745.1	26S proteasome non-ATPase regulatory subunit 14 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002302444.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQK2

Fln msg: Overlapping hits, possible frame ERROR between 474 and 374, and overlapping frame ERROR between 652 and 603, your sequence is shorter than subject: 280 - 308

Fln protein: MGPPASDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKIKNxxxxxxxxxxxxxxxxxxxDCHSKTNEQTVQEMLDLAIKYNKAVQEEDQLPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCAGGAGCAGGGGGA_-_ATGGGACCGCCCGCTTCAGATGGCCCCATGCTCGATTCCTCCGAGCAGGTCTACATTTCTTCGCTCGCCCTTCTCAAAATGCTCAAACACGGTAGAGCTGGAGTGCCTATGGAGGTCATGGGGTTGATGCTTGGTGAGTTTGTTGATGAGTACACAGTCCGAGTTGTGGACGTGTTTGCCATGCCCCAGAGTGGTACTGGAGTGAGTGTAGAGGCAGTTGATCATGTTTTTCAGACAAACATGCTTGACATGCTTAAGCAAACTGGCAGGCAAGAGATGGTTGTAGGTTGGTACCATTCACATCCAGGTTTTGGATGCTGGCTTTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTTCAAATCTTGGGCATCTGAATAAACCATCCATCCAGGCATTAATCCATGGCTTGAATCGACACTACTATTCTATTGCAATTAATTATCGGAAAAATGAACTGGAAGAAAAGATAAAGAACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGATTGCCATTCTAAGACAAATGAACAGACAGTTCAGGAAATGCTTGATCTTGCAATCAAGTATAACAAAGCCGTACAAGAAGAGGATCAACTACCTCCTGAAAAGCTTGCCATTGCAAATGTTGGCAGACAAGATGCCAAAAAGCACCTAGAAGAGCATGTGTCTAATCTGATGTCTTCAAACATAGTTCAAACACTTGGCACAATGCTTGATACAGTTGTGTTTTAG___

Fln Alignment:

AllPine_a_rep_c103421___IFSGAGGMGPPASDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSG-------------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKIKN*TQFxxxxxxxxxxxxxxQRFDCHSKTNEQTVQEMLDLAIKYNKAVQEEDQLPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF
C0PQK2________________IFSGAGGMGPPAPDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKM-----LxxxxxxxxxxxxxxQRFDCHSKTNEQTVQEMLDLAIKYNKAVQEEDQLTPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain