SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141086

Length: 549 nt

UniGene Fasta

>sp_v3.0_unigene141086
AACGGATGGTCTCGCTCCAGTGTGGGATAAGGATGTGAAATTTTATGCAGTCAAAGATTTATTAGGAAGTCCAGTCGCATATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCAAGGTGGTGCATGGATGGATGCAGTTTTTGGTCGAAGTCGTGTGCTTGCACAGGATGGTACTTCAGTCAGGCTACCCATAGCACATATGGTTTGCAACCAGACACCACCGGTTGGAGATAAGCCAAGCCTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCAAGCAAGATGAAGGTTTAGTAGCAGGCAATCGTGGTGTGGAGTGGGATGCAGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGACAGACACTTATGGGCATGGCTAAGCATTATGAACTGGCGAGGCACTCTCTGAAGAAACATATCTGTACTTGTGCTGCAAGAACATTCAGGAAAGCTTCAGAGAACTTACGTCAGATCCGATTTGCGAATATTGATCT

Ace file of the UniGene sp_v3.0_unigene141086

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zincin-like metalloproteases family protein [Arabidopsis thaliana] gb\|AAK76610.1\| putative oligopeptidase A [Arabidopsis thaliana] gb\|AAN13220.1\| putative oligopeptidase A [Arabidopsis thaliana] gb\|AED98078.1\| Zincin-like metalloproteases family protein [	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Oligopeptidase A	-	-	4.065e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.4.24.7-	-	5.523e-09	-

Source	Gene names
Sma3	At5g10540; At5g65620; CHLREDRAFT_187947; F12B17_110; GSVIVT00004192001; GSVIVT00022112001; MICPUCDRAFT_35196; MICPUN_98128; OJ1124_D06.18; Os02g0830100; OsI_09551; OsJ_08986; PHATRDRAFT_8670; POPTRDRAFT_243706; POPTRDRAFT_589747; POPTRDRAFT_674339; POPTRD

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M3A/M3B	IPR001567	-	-
Sma3		IPR017442	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65620.1	Zincin-like metalloproteases family protein chr5:26221951-26225784 FORWARD LENGTH=791	76%
RefSeq	Arabidopsis thaliana	NP_569013.1	Zincin-like metalloproteases family protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002319998.1	predicted protein, partial [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADL7

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 182 - 413

Fln protein: TDGLAPVWDKDVKFYAVKDLLGSPVAYFYFDPYSRPSEKQGGAWMDAVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGNRGVEWDAVELPSQFMENWCYHRQTLMGMAKHYELARHSLKKHICTCAARTFRKASENLRQIRFANID

Protein Length: 183

Fln nts: AACGGATGGTCTCGCTCCAGTGTGGGATAAGGATGTGAAATTTTATGCAGTCAAAGATTTATTAGGAAGTCCAGTCGCATATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCAAGGTGGTGCATGGATGGATGCAGTTTTTGGTCGAAGTCGTGTGCTTGCACAGGATGGTACTTCAGTCAGGCTACCCATAGCACATATGGTTTGCAACCAGACACCACCGGTTGGAGATAAGCCAAGCCTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCAAGCAAGATGAAGGTTTAGTAGCAGGCAATCGTGGTGTGGAGTGGGATGCAGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGACAGACACTTATGGGCATGGCTAAGCATTATGAACTGGCGAGGCACTCTCTGAAGAAACATATCTGTACTTGTGCTGCAAGAACATTCAGGAAAGCTTCAGAGAACTTACGTCAGATCCGATTTGCGAATATTGATCT

Fln Alignment:

AllPine_a_rep_c103077___DGLAPVWDKDVKFYAVKDLLGSPVAYFYFDPYSRPSEKQGGAWMDAVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGNRGVEWDAVELPSQFMENWCYHRQTLMGMAKHYELARH-SLKKHICTCAARTFRKASENLRQIRFANID
D5ADL7________________DGLAPVWNKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGSSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGIAKHYKTGETLSEEIYLKLVAARTFRAASQNLRQIRFASSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
304	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain