SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141047

Length: 556 nt

UniGene Fasta

>sp_v3.0_unigene141047
ATGGGGAAGGCTTAGATATCTCCTGACACGGCCGCTAAATTCTATATAAAACTGATTTCAATTGCATACCATGTGTTCTCCATGAGAGCGTAGATCCCTCAACCTCTTCAGGGTGAAGATTGTTCGTCTGTTTTGGGGCAAAACGCCTGTTGCCATAATCTCAAGGGGAATGCTTTCCATGCTGTTTCTTTCTTATCCCAACAAGAACTAAGGAACATTTCAAGTCTAGCTGCATTGAGCTTTCTTTAGAGTTTGGATATTAGTTCACAGCTGTGACTAGGCACAGAAGTACCAAAGTGATGGGTTCGTTAGATGCAACCAGAGCAGAACTTGCTCTCCTTGTCTTGTATTTGAACAAAGCAGAAGCCAGAGATAAAATCTGTAGAGCTATTCAATATGGCTCAAGTTCCTCAGCAATGGTGAGCCTGGCACAGCACAAAATGTTGACAAGTCCACAAGTTTGGCACGAAAAGTTTTTCGACTTTTCAAGTTCGTGAACGATCTACATGCTCTTCTTACACCAACTGCCAAAGTCAACTCCACTTCCTCTTGTTTT

Ace file of the UniGene sp_v3.0_unigene141047

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative peroxisomal membrane protein PEX11-1 [Arabidopsis thaliana]	-	-	3.0e-13	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Peroxisomal membrane protein PEX11-1	-	-	4.891e-09	-

Source	Gene names
Sma3	At1g01820; At2g45740; At3g61070; F4I18.28; GSVIVT00036883001; LOC_Os03g02590; LOC_Os06g03660; MtrDRAFT_AC160924g18v1; OSJNBa0038F22.10-1; Os03g0117100; Os06g0127000; OsI_09743; OsI_21452; OsJ_09180; OsJ_19960; P0425F02.44-1; PEX11-1; PEX11-2; PEX11-5; PEX

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	-
Sma3	integral to peroxisomal membrane	GO:0005779	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxisome fission	GO:0016559	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Malate dehydrogenase, active site	IPR001252	-	0.0	-
Sma3	Peroxisomal biogenesis factor 11	IPR008733	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01820.1	PEX11C peroxin 11c chr1:296213-297723 REVERSE LENGTH=235	2.0e-17	83%
RefSeq	Arabidopsis thaliana	NP_563636.1	peroxisomal membrane protein 11C [Arabidopsis thaliana]	2.0e-17	83%
RefSeq	Populus trichocarpa	XP_002301325.1	predicted protein [Populus trichocarpa]	5.0e-17	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZS9

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 152 aas, your sequence is shorter than subject: 85 - 238

Fln protein: MGSLDATRAELALLVLYLNKAEARDKICRAIQYGSSSSAMVSLAQHKMLTSPQVWHEKFFDFSSS*TIYMLFLHQLPKSTPLPLV

Protein Length: 86

Fln nts: ATGGGGAAGGCTTAGATATCTCCTGACACGGCCGCTAAATTCTATATAAAACTGATTTCAATTGCATACCATGTGTTCTCCATGAGAGCGTAGATCCCTCAACCTCTTCAGGGTGAAGATTGTTCGTCTGTTTTGGGGCAAAACGCCTGTTGCCATAATCTCAAGGGGAATGCTTTCCATGCTGTTTCTTTCTTATCCCAACAAGAACTAAGGAACATTTCAAGTCTAGCTGCATTGAGCTTTCTTTAGAGTTTGGATATTAGTTCACAGCTGTGACTAGGCACAGAAGTACCAAAGTG_-_ATGGGTTCGTTAGATGCAACCAGAGCAGAACTTGCTCTCCTTGTCTTGTATTTGAACAAAGCAGAAGCCAGAGATAAAATCTGTAGAGCTATTCAATATGGCTCAAGTTCCTCAGCAATGGTGAGCCTGGCACAGCACAAAATGTTGACAAGTCCACAAGTTTGGCACGAAAAGTTTTTCGACTTTTCAAGTTCGTGAACGATCTACATGCTCTTCTTACACCAACTGCCAAAGTCAACTCCACTTCCTCTTGTTTT

Fln Alignment:

AllPine_a_rep_c102971___MGSLDATRAELALLVLYLNKAEARDKICRAIQYGSS--SSAMVSLAQHKMLTSPQVWHEKFFDFSSS*TIYMLFLHQLPKSTPLPLV
A9NZS9________________MGSIDATRAELALLVLYLNKAEARDKICRAIQYGSKFISNGEPGTAQN-VDKSTSLARKVFRLFKFVNDLHAL-LTPLPKSTPLPLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain