SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140927

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene140927
CGTCGTGACCTTGGCTGTCACTCGTGACTTTGCTGTGAGTCAAAGACATCACCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTTGCTGGGAACAAAGATCTGTATCTGGGAACGTTCAGTTCACAGGAAGAGGCAGCAGAAGCCTATGATATCGCTGCCATCAAATTCAGAGGTCTCAATGCTGTGACAAACTTTGACATGAGCAGATACGACGTGAATAGCATACTTGAAAGCAGCACATTACCCATTGGGGGAGCTGCTGCAAAGCGCATCAAGGAAGCGGAGCCATCTGATCCAAGTGTAGATGGTCGTCGTACGGATGA

Ace file of the UniGene sp_v3.0_unigene140927

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein AINTEGUMENTA, putative n=1 Tax=Ricinus communis RepID=B9RM33_RICCO	-	-	4.0e-35	81%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	78%
Sma3	AP2 domain-containing transcription factor	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	5.47e-08	-

Source	Gene names
Sma3	117M18_31; 57h21.37; AIL1; AIL3; AIL4; AIL5; AIL6; AIL7; ANT; ANT1; ANTL1A; ANTL1B; AP2D14; AP2D17; AP2D4; AP2D8; AP2D9; AP2L2; ASML1; At1g16060; At1g51190; At1g72570; At1g79700; At3g20840; At3g54320; At4g37750; At5g10510; At5g17430; At5g57390; At5g65510;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20840.1	PLT1 Integrase-type DNA-binding superfamily protein chr3:7300764-7303370 FORWARD LENGTH=574	5.0e-40	83%
RefSeq	Arabidopsis thaliana	NP_188720.2	AP2-like ethylene-responsive transcription factor PLT1 [Arabidopsis thaliana]	6.0e-40	83%
RefSeq	Populus trichocarpa	XP_002316179.1	AP2 domain-containing transcription factor [Populus trichocarpa]	5.00264e-43	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 108 - 606

Fln protein: VVTLAVTRDFAVSQRHHQHGRWQARIGRVAGNKDLYLGTFSSQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAAKRIKEAEPSDPSVDGRRTD

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACTTTGCTGTGAGTCAAAGACATCACCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTTGCTGGGAACAAAGATCTGTATCTGGGAACGTTCAGTTCACAGGAAGAGGCAGCAGAAGCCTATGATATCGCTGCCATCAAATTCAGAGGTCTCAATGCTGTGACAAACTTTGACATGAGCAGATACGACGTGAATAGCATACTTGAAAGCAGCACATTACCCATTGGGGGAGCTGCTGCAAAGCGCATCAAGGAAGCGGAGCCATCTGATCCAAGTGTAGATGGTCGTCGTACGGATGA

Fln Alignment:

AllPine_a_rep_c102595___RHHQHGRWQARIGRVAGNKDLYLGTFSSQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAAKRIKEAE-PSDPSVD
Q76H96________________RHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTL-IAGDLAKRNKEIEQSSEPSGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain