SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140824

Length: 574 nt

UniGene Fasta

>sp_v3.0_unigene140824
ATTATAGAGAAGCAGGCTGATGTAAATGGGTGCACAGCATTTACTGATTTTAAAGAAGAAGAAAGCCCTGAATATCCTCCTACTGTCAATAATGAAAGGTTGCATAGTCATGTTCAAAAGGTTGGAGAAACATTGCTTGGGGCACATAATGTGAAGCATATGGGCAGAGAATGGGAGCAGAGGATTTTTCCTTCTATTCACAGATTATACCAGGCTCGATATTTTGGATTGGTATGAGAAATGAGAGCATTGGCTCAATCCATTCAGGGCATTCCCCCCATTTCTTCGTGGATGAAAATGTGCTTCCTCTTGGAGCTGCTTTACATGCATCAATTGCAAAAATGTATTTAGACCATGGCGGACCACTGAGCAAGGACTAATCATGCATTTTCATTTTCTTAATTATGCTGCTTAGTAACAATTTCAAAAGCGAAATAGAATTTCCAATAAATAAACATTCTTATGTTTACTAAACATTTTATTGAAGTATAATATTACTGAAGCAATTCGAATTGGAGGGATTGTTTTACAATATTTTTTATATTGTAATATATAAAAAACATTCTGTTTGTCC

Ace file of the UniGene sp_v3.0_unigene140824

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA-amino acid hydrolase ILR1, putative n=1 Tax=Ricinus communis RepID=B9S5P0_RICCO	-	-	2.0e-23	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Auxin conjugate hydrolase	-	-	1.359e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	1.315e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine biosynthesis	00300		1.315e-12	%
Sma3	Fluorobenzoate degradation	00364		1.315e-12	%
Sma3	Glutathione metabolism	00480		1.315e-12	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.315e-12	%
Sma3	Lipopolysaccharide biosynthesis	00540		1.315e-12	%
Sma3	Sphingolipid metabolism	00600		1.315e-12	%
Sma3	Metabolic pathways	01100		1.315e-12	%
Sma3	Biosynthesis of secondary metabolites	01110		1.315e-12	%
Sma3	Hippurate hydrolase.	EC:3.5.1.32	-	4.258e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylalanine metabolism	00360		4.258e-11	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		4.258e-11	%

Source	Gene names
Sma3	At1g44350; At5g54140; GR1; GSVIVT00015404001; GSVIVT00021551001; GSVIVT00037152001; GSVIVT00037154001; IAR31; IAR32; IAR33; IAR36; ILL1; ILL11; ILL3; ILL5; ILL6; ILL8; ILL9; Ill3; LOC_Os04g44110; LOC_Os06g47620; MJP23.12; OSIGBa0131L05.10; OSJNBa0019D11.1

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	Amidohydrolase	IPR017439	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G44350.1	ILL6 IAA-leucine resistant (ILR)-like gene 6 chr1:16834749-16838201 REVERSE LENGTH=464	2.0e-21	60%
RefSeq	Arabidopsis thaliana	NP_175086.1	IAA-amino acid hydrolase ILR1-like 6 [Arabidopsis thaliana]	2.0e-21	60%
RefSeq	Populus trichocarpa	XP_002302231.1	iaa-amino acid hydrolase 9 [Populus trichocarpa]	4.0e-24	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVQ4

Fln msg: Separated hits, possible frame ERROR between 156 and 171, your sequence is shorter than subject: 127 - 476

Fln protein: IIEKQADVNGCTAFTDFKEEESPEYPPTVNNERLHSHVQKVGETLLGAHNVxxxxxxMGAEDFSFYSQIIPGSIFWIGMRNESIGSIHSGHSPHFFVDENVLPLGAALHASIAKMYLDHGGPLSKD*

Protein Length: 128

Fln nts: ATTATAGAGAAGCAGGCTGATGTAAATGGGTGCACAGCATTTACTGATTTTAAAGAAGAAGAAAGCCCTGAATATCCTCCTACTGTCAATAATGAAAGGTTGCATAGTCATGTTCAAAAGGTTGGAGAAACATTGCTTGGGGCACATAATGTGAAxxxxxxxxxxxxxxxAATGGGAGCAGAGGATTTTTCCTTCTATTCACAGATTATACCAGGCTCGATATTTTGGATTGGTATGAGAAATGAGAGCATTGGCTCAATCCATTCAGGGCATTCCCCCCATTTCTTCGTGGATGAAAATGTGCTTCCTCTTGGAGCTGCTTTACATGCATCAATTGCAAAAATGTATTTAGACCATGGCGGACCACTGAGCAAGGACTAATCATGCATTTTCATTTTCTTAATTATGCTGCTTAGTAACAATTTCAAAAGCGAAATAGAATTTCCAATAAATAAACATTCTTATGTTTACTAAACATTTTATTGAAGTATAATATTACTGAAGCAATTCGAATTGGAGGGATTGTTTTACAATATTTTTTATATTGTAATATATAAAAAACATTCTGTTTGTCC

Fln Alignment:

AllPine_a_rep_c102280___IIEKQADVNGCTAFTDFKEEESPEYPPTVNNERLHSHVQKVGETLLGAHNVKxxxxxMGAEDFSFYSQIIPGSIFWIGMRNEXXXXXXXXXXPHFFVDENVLPLGAALHASIAKMYLD
A9NVQ4________________VILGQAAVHRCTAVVDFFEKEDQFYPPTFNDKDMHKHVHRVAADVVGVHNFKxxxxxMGAEDFVFYTEVTPAAFFYIGMRNEAIGSTRSGHSPYFMIDENVLPTGAAMHAAIAERFLN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
241	80	20			0.995493
242	80		20		0.995493
246	80			20	0.995493
251	80	20			0.995493
262	80	20			0.995493
265	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain