SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140795

Length: 374 nt

UniGene Fasta

>sp_v3.0_unigene140795
TCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGGCGTACATCAAAAGGGGAGGTGAAACTACGCACGAACAGCATTGCTTCTATTTTTGCATGGACACGGTGGGCTTGCACACAGGGCAAAACTGGACGGAAATGCAAGGCTACTTGAATTTGCAGAGAAGCTGGAAGTTGCTTAAAAGTAGTAGGTACTGGTGAGGCCGGAAAATGACAAAAGACTTGGCGCTAATTATTCACGGTTCCAACCTTTCCAGGGAGCACTACCTAAACACTGAAGAGTTTATTGACGCAGTGGCAGCCGATCTGAAAATAAGACTTTCTGCAAAACCAACGAGTTCTTAAGGGATTGTGAAATGTGTGGCGATTT

Ace file of the UniGene sp_v3.0_unigene140795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate dehydrogenase [NADP] n=4 Tax=Pinaceae RepID=B8LKH5_PICSI	-	-	5.0e-24	88%
FL-Next	sp=Isocitrate dehydrogenase [NADP]; Pinus pinaster (Maritime pine).	-	-	0.0	53%
Sma3	NADP-dependent isocitrate dehydrogenase	-	-	6.386e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase (NADP(+)).	EC:1.1.1.42	-	5.025e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	5.025e-29	%
Sma3	Glutathione metabolism	00480	5.025e-29	%
Sma3	Carbon fixation pathways in prokaryotes	00720	5.025e-29	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.025e-29	%
Sma3	Biosynthesis of terpenoids and steroids	01062	5.025e-29	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.025e-29	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	5.025e-29	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	5.025e-29	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	5.025e-29	%
Sma3	Biosynthesis of plant hormones	01070	5.025e-29	%
Sma3	Metabolic pathways	01100	5.025e-29	%
Sma3	Biosynthesis of secondary metabolites	01110	5.025e-29	%

Source	Gene names
Sma3	At1g54340; At1g65930; DcNADP-ICDH1; EgICDH; F20D21.16; GSVIVT00020702001; GSVIVT00023479001; ICDH; ICDH-1; IDH; IDH1; LaICDH1; LaICDH2; OJ1735_C10.15; OSJNBa0049B20.19; OSJNBa0049H05.1; OSJNBb0006H05.32; Os01g0248400; Os01g0654500; Os05g0573200; OsI_01162

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	isocitrate dehydrogenase (NADP+) activity	GO:0004450	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	isocitrate metabolic process	GO:0006102	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-
Sma3	Isocitrate dehydrogenase NADP-dependent, eukaryotic-type	IPR004790	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G65930.1	cICDH cytosolic NADP+-dependent isocitrate dehydrogenase chr1:24539088-24541861 FORWARD LENGTH=410	5.0e-23	85%
RefSeq	Arabidopsis thaliana	NP_176768.1	isocitrate dehydrogenase [Arabidopsis thaliana]	6.0e-23	85%
RefSeq	Populus trichocarpa	XP_002305928.1	predicted protein [Populus trichocarpa]	1.0e-22	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A0AR16

Fln msg: Overlapping hits, possible frame ERROR between 215 and 212, your sequence is shorter than subject: 116 - 417

Fln protein: EAEAAHGTVTRHYRRTSKGEVKLRTNSIASIFAWTRWACTQGKTGRKCKAT*ICREAGSCLKVVGTGEAxxxTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPTSS*

Protein Length: 117

Fln nts: TCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGGCGTACATCAAAAGGGGAGGTGAAACTACGCACGAACAGCATTGCTTCTATTTTTGCATGGACACGGTGGGCTTGCACACAGGGCAAAACTGGACGGAAATGCAAGGCTACTTGAATTTGCAGAGAAGCTGGAAGTTGCTTAAAAGTAGTAGGTACTGGTGAGGCCxxxxxxxxxACAAAAGACTTGGCGCTAATTATTCACGGTTCCAACCTTTCCAGGGAGCACTACCTAAACACTGAAGAGTTTATTGACGCAGTGGCAGCCGATCTGAAAATAAGACTTTCTGCAAAACCAACGAGTTCTTAAGGGATTGTGAAATGTGTGGCGATTT

Fln Alignment:

AllPine_a_rep_c102147___EAEAAHGTVTRHYRRTSKGEVKLRTNSIASIFAWTRWACTQGKTGRKCKAT*ICREAGSCLKV--VGTGEAGxMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPTSS
A0AR16________________EAEAAHGTVTRHYRVHQKGG-ETSTNSIASIFAWTRGLAHRAKLDGNARLL----EFAEKLEVACVGTVEAGxMTKDLALIIHGSNLSREHYLNTEEFIDAVAADLKIRLSAKPKSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain