SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140591

Length: 850 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene140591 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein SA n=1 Tax=Glycine max RepID=RSSA_SOYBN	-	-	0.0	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	40S ribosomal protein SA	-	-	2.883e-36	-

Source	Gene names
Sma3	179B; AT1G72370; At1g72370; At3g04770; B1056G08.113; CHLRE_126059; F7O18.26; GSVIVT00014790001; GSVIVT00034021001; LOC_Os03g08440; LRP; MICPUCDRAFT_13384; MICPUN_107814; OSJNBa0032G08.18; OSTLU_12355; Os03g0182600; Os07g0616600; OsI_10272; OsI_11954; OsI_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72370.1	P40, AP40, RP40, RPSAA 40s ribosomal protein SA chr1:27243148-27244842 REVERSE LENGTH=298	91%
RefSeq	Arabidopsis thaliana	NP_001031267.1	40S ribosomal protein Sa-1 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002303327.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEF0

Fln msg: your sequence is shorter than subject: 262 - 330

Fln protein: WEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIVPGRKWDVMVDLFFYREAEEAKEREEEEVAPAEYVPNFTLGAEQWPTEVADAQWESEAPAVPSIVPPVASADWMAALFRAVAWDMAAAPAIPAAAGWDAAPVPQQPLAGMGATSWEPAPAAPTNWS*

Protein Length: 263

Fln nts: CTTGGGAAAAGCTGCAGCTTGCTGCAAGAGTAATTGTAGCAATAGAGAACCCTCAGGATATAATTGTACAATCTGCAAGGCCATATGGTCAGCGAGCAGTTCTGAAATTTGCCCAATTTACTGGAGCTCATGCAATTGCTGGCAGGCATACACCTGGAACATTTACAAATCAGCTTCAGACATCATTTTCTGAGCCTCGTCTTCTGATTCTTACTGATCCAAGGACTGACCATCAGCCTATAAGAGAAGCAGCCCTTGGTAATATTCCCACTATTGCTTTTTGCGACACAGATTCTCCAATGAAACATGTTGACATTGGTATTCCTGCAAATAACAAGGGCAAGCACAGCATTGGTTGTCTGTTTTGGATGTTAGCAAGGATGGTTTTACAGATGCGAGGGACAATTGTACCAGGTCGTAAATGGGATGTCATGGTTGACTTATTCTTTTACAGGGAGGCAGAAGAAGCGAAGGAAAGAGAAGAAGAGGAGGTTGCTCCAGCTGAGTATGTTCCTAATTTTACTCTTGGTGCAGAGCAATGGCCTACAGAGGTTGCTGATGCTCAGTGGGAATCTGAAGCACCTGCAGTTCCTAGCATTGTGCCTCCAGTTGCTAGTGCTGATTGGATGGCAGCTCTGTTCCGAGCTGTGGCATGGGATATGGCAGCTGCTCCAGCCATACCAGCAGCTGCAGGGTGGGATGCAGCTCCTGTTCCGCAACAACCTCTAGCTGGAATGGGTGCAACTAGTTGGGAACCTGCTCCTGCTGCACCCACAAATTGGTCTTAA___TAGTTTATCTTTGGGAGGGAAGAAGCCTTGAAATTACATTGCTTTCTCTCCAGTAATATCAA

Fln Alignment:

AllPine_a_rep_c101282___WEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIVPGRKWDVMVDLFFXXXXXXXXXXXXXXXXXXXXXPNFTLGAEQWPTEVADAQWEXXXXXXXXXXXXXXXADWMAA--------------LFRXXXXXXXXXXXXXXXXXXXXXXXPQQPLAGMGATSWEPAPAAPTNWS
D5AEF0________________WEKLQIAARVIVAIENPQDIIVQSARPYGQRAVLKFAQFTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTIAPGRKWDVMVDLFFYREPEEAKEREEEEVAQAEYVPTFTLGAEQWPTEVADAQWESEAPAVPGIVPPVAGADWMAAPVPDAVGWDMAAAPAIPAAAAAGWDAAMPAVAAGWDAAPVPQQPLAGVGTASWEPAPAAPSSWA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
427			10	90	0.90298
438	90		10		0.90298
605		11		88	0.923564
716	87		12		0.992554
740			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain