SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140546

Length: 554 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene140546
TTGACTCTAAAATAACTGAAGATGGAAAGGTTTTCATAACCAACAAGGGTGGAATTCAGATACCAATGTTCATTGTATCCAAGAAAGGCATTGCTCTTGATGGTTCTCACCCAGTTCTATTACATGGAATGTTGCTAATGTTAAAGCCCCATTTTCATATTAGCCGCCGAGTTCCTTGTCAAAGAGGGATATACACAACCTAAAAAGTTATGTATTGAAGGTGGCAGTAATGGTGGACTTCTTGTTGCAGCTTGTATAAATCAGAGGCCTGACCTATTTGGTTGTGCACTAGCTCATGTTGGTGTTATGGACATGTTGCGTTTTCATAAATTTACTATTGGCCATGCATGGACTTCTGATTATGGCTCTTCAGACAAGGAAGAGGAATTTCATTGGCTGATTAAATACTCACCATTGCATAATGTAAAGAGACCATGGGAGACACGAGGACAGAATTTACAGTATCCTGCTACAATGTTATTGACAGCAGATCATGATGACCGTGTTGTGCCACTCCATTCTTTGAAACTCCTAGCAACAATGCAATATGTTCT

Ace file of the UniGene sp_v3.0_unigene140546 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	prolyl oligopeptidase-like protein [Arabidopsis thaliana] gb\|AEE35801.1\| prolyl oligopeptidase-like protein [Arabidopsis thaliana]	-	-	0.0	85%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	54%
Sma3	Putative prolyl endopeptidase	-	-	6.904e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prolyl oligopeptidase.	EC:3.4.21.26	-	6.904e-09	-

Source	Gene names
Sma3	At1g76140; CHLREDRAFT_103061; CHLREDRAFT_147894; F14O10.2; GSVIVT00015534001; OSJNBa0084K11.14; Os01g0108200; Os04g0561500; OsI_00077; OsI_16976; OsJ_00069; OsJ_15773; P0482C06.18; PHYPADRAFT_114923; PHYPADRAFT_178375; PHYPADRAFT_182722; PHYPADRAFT_199126

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76140.1	Prolyl oligopeptidase family protein chr1:28571187-28574852 FORWARD LENGTH=795	85%
RefSeq	Arabidopsis thaliana	NP_177741.3	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002301932.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1JSY1

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 53 aas, your sequence is shorter than subject: 184 - 727

Fln protein: DSKITEDGKVFITNKGGIQIPMFIVSKKGIALDGSHPVLLHGMLLMLKPHxxxxxxxxLVKEGYTQPKKLCIEGGSNGGLLVAACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGSSDKEEEFHWLIKYSPLHNVKRPWETRGQNLQYPATMLLTADHDDRVVPLHSLKLLATMQYV

Protein Length: 185

Fln nts: TTGACTCTAAAATAACTGAAGATGGAAAGGTTTTCATAACCAACAAGGGTGGAATTCAGATACCAATGTTCATTGTATCCAAGAAAGGCATTGCTCTTGATGGTTCTCACCCAGTTCTATTACATGGAATGTTGCTAATGTTAAAGCCCCATxxxxxxxxxxxxxxxxxxxxxxxxCTTGTCAAAGAGGGATATACACAACCTAAAAAGTTATGTATTGAAGGTGGCAGTAATGGTGGACTTCTTGTTGCAGCTTGTATAAATCAGAGGCCTGACCTATTTGGTTGTGCACTAGCTCATGTTGGTGTTATGGACATGTTGCGTTTTCATAAATTTACTATTGGCCATGCATGGACTTCTGATTATGGCTCTTCAGACAAGGAAGAGGAATTTCATTGGCTGATTAAATACTCACCATTGCATAATGTAAAGAGACCATGGGAGACACGAGGACAGAATTTACAGTATCCTGCTACAATGTTATTGACAGCAGATCATGATGACCGTGTTGTGCCACTCCATTCTTTGAAACTCCTAGCAACAATGCAATATGTTCT

Fln Alignment:

AllPine_a_rep_c100990___FITNKGGIQIPMFIVSKKGIALDGSHPVLLH---GMLLMLKPHFHISRRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFILAAEFLVKEGYTQPKKLCIEGGSNGGLLVAACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGSSDKEEEFHWLIKYSPLHNVKRPWET-RGQNLQYPATMLLTADHDDRVVPLHSLKLLATMQYV
I1JSY1________________FVTSKDGTKIPMFIVAKKDITLDGSHPCLLYGYGGFNINITPYFSVSRIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFISAAEYLVSTGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHHDQSFQYPSTMLLTADHDDRVVPLHTLKLLATMQYV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
290		80		20	0.995493
300	80		20		0.995493
302	75		25		0.996473
333		66	33		0.997452
335	66			33	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain