SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140532

Length: 1346 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene140532

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Endo-1,4-beta-glucanase, putative	-	-	1.739e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cellulase.	EC:3.2.1.4	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	6J23.18; Al-cel1; At1g02800; At1g19940; At1g22880; At1g23210; At1g48930; At1g64390; At1g70710; At1g71380; At1g75680; At2g32990; At2g44540; At2g44550; At2g44560; At2g44570; At3g43860; At4g02290; At4g09740; At4g11050; At4g23560; At4g38990; At4g39000; At4g39

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	NADH:ubiquinone oxidoreductase, B12 subunit	IPR012576	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02800.1	ATCEL2, CEL2 cellulase 2 chr1:613386-616103 REVERSE LENGTH=501	67%
RefSeq	Arabidopsis thaliana	NP_171779.1	endoglucanase 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002301487.1	glycosyl hydrolase family 9 [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH0

Fln msg: your sequence is shorter than subject: 351 - 514

Fln protein: MGDHKCWERPEDMDTPRNVYKIDAEHPGSDVAAETAAALAAASIIFSTTNRTYSDQLLETAMRVFDFADKHRGAYSDSLQSEVCPFYCSYSGYHDELLWGAAWLERASRNVSYLNYIQSNGQSLGADDSVNIFSWDEKHAGTRVLLAKEVLVEKSKSLGEYRGHADNFICSLLPGTSSSQAQYTPGGLLFQMSDSNLQYVTSTTFLLFTYAKYLSVSKQVVKCGNMIVSPTQIRTFAKKQVDYILGDNPLGMSYMVGYSAKFPERIHHRGSSLPSVYEHPQTIACNDGFQSLYSNDPNPNILVGAVVGGPDNNDRFSDERSDYEHSEPTTYINAPLVGSLAYLAHSGSLL*

Protein Length: 352

Fln nts: ATGGGGGATCACAAATGCTGGGAGAGGCCCGAAGACATGGACACACCTCGCAATGTCTATAAAATAGACGCTGAACATCCTGGCTCCGACGTTGCGGCCGAAACTGCGGCAGCGCTTGCAGCCGCCTCCATTATATTCAGTACAACTAATCGTACTTACTCTGACCAGCTCCTTGAAACTGCAATGCGGGTGTTTGATTTCGCGGATAAACACAGAGGCGCTTACAGTGACTCTCTGCAGTCGGAAGTTTGTCCATTTTATTGTTCATATTCGGGATATCATGACGAATTACTGTGGGGAGCGGCATGGTTAGAAAGAGCTTCGAGGAATGTATCCTATCTCAACTACATTCAATCAAATGGCCAGAGTCTTGGCGCGGACGATAGCGTCAATATTTTCAGCTGGGACGAGAAGCATGCAGGGACGAGAGTTCTTTTGGCTAAGGAAGTTCTGGTAGAAAAGTCCAAGTCCCTTGGCGAATACAGGGGCCACGCCGACAACTTCATCTGCTCTCTCTTGCCGGGAACATCATCTTCGCAGGCGCAGTACACACCAGGTGGATTGCTCTTCCAAATGAGTGATAGTAATTTGCAATATGTGACGTCCACAACTTTCCTGCTTTTCACCTATGCAAAATACTTGAGCGTCTCCAAACAAGTGGTGAAATGTGGGAACATGATAGTCAGTCCTACCCAAATACGTACTTTTGCGAAAAAACAGGTGGACTACATATTGGGAGACAACCCACTAGGAATGTCATATATGGTGGGCTACAGCGCCAAGTTTCCAGAGCGCATACATCACAGGGGCTCGTCATTACCTTCGGTATACGAGCATCCCCAAACGATTGCTTGCAACGATGGCTTCCAGTCGTTGTACAGCAACGACCCCAACCCAAATATTCTGGTTGGTGCCGTAGTTGGAGGCCCAGACAACAATGACCGCTTCTCAGATGAGCGCAGTGATTATGAGCACTCTGAACCCACCACATACATCAATGCTCCATTGGTGGGCTCCCTTGCTTATTTGGCACATTCCGGTTCCTTACTTTAG___CAGTTGCAGCCTTCTAACTTCACGACCTCTCATTGCCCAAACTCATACTTTCTCTGTTTGCTTTGTCTTGGCTTTGCTAATGTCAAGAATGATCATGTCTGTATATTGCTTGGCCACATATTCATTTCGCTTTGCTCTCAGAGATGACGATGACGATGGCTCTACATGTATTCATGTGCAACGGATGTCTATTAGGGACACCTGATTTGAATCAAATCTATGGAGCCATGCAGTCTCATATATGTGAAACGTGTAGGGCTACCTCACACTTTGATCTTACTAAATGTTAAACC

Fln Alignment:

AllPine_a_rep_c100888___DHKCWERPEDMDTPRNVYKIDAEHPGSDVXXXXXXXXXXXSIIFSTTNRTYSDQLLETAMRVFDFADKHRGAYSDSLQSEVCPFYCSYSGYHDELLWGAAWLERASRNVSYLNYIQSNGQSLGADDSVNIFSWDEKHAGTRVLLAKEVLVEKSKSLGEYRGHADNFICSLLPGTSSSQAQYTPGGLLFQMSDSNLQYVTSTTFLLFTYAKYLSVSKQVVKCGNMIVSPTQIRTFAKKQVDYILGDNPLGMSYMVGYSAKFPERIHHRGSSLPSVYEHPQTIACNDGFQSLYSNDPNPNILVGAVVGGPDNNDRFSDERSDYEHSEPTTYINAPLVGSLAYLAHS
A9NUH0________________DHKCWERPEDMDTPRNVYKIDAEHPGSDIAAETAAALAAASMVFRATDPTYSGHLLQTAMRVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNVSYISYIQSNGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLQEYRGHADNFICSLLPGTQNSQAQYTPGGLLFKMSDNNLQYVTSTTFLLFTYAKYLTVSKQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPEHVHHRGSSLPSIYQHPRIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDRFSDERNDYAHSEPTTYINAPLVGSLAYLAHS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
334	25			75	0.996473
801	75		25		0.996473
974			14	85	0.993533
975	85		14		0.993533
976			14	85	0.993533
1005	87			12	0.992554
1123		25		75	0.996473
1168		20	80		0.995503
1175		75	25		0.996473
1188		80		20	0.995493
1279		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain