SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140504

Length: 839 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene140504 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABCG subfamily transporter n=2 Tax=Solanum tuberosum RepID=F5C1T7_SOLTU	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Sma3	ATP-binding cassette transporter, putative	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	5.49e-08	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At2g26910; At2g29940; At2g36380; At2g37280; At3g16340; At3g53480; At4g15215; At4g15220/At4g15230; B1045F02.15; B1090H08.39; F12C20.5; F1O11.1; F23F1.14; F23H11.19; F3G5.7; F4P12.180; F9L1.15; FCAALL.241; GSVIVT000003

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16340.1	ATPDR1, PDR1 pleiotropic drug resistance 1 chr3:5539897-5546263 FORWARD LENGTH=1416	54%
RefSeq	Arabidopsis thaliana	NP_566543.1	ABC transporter G family member 29 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002298123.1	pleiotropic drug resistance, ABC transporter family protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
92		33		66	0.997452
212			33	66	0.997458
307		80	20		0.995493
313			20	80	0.995493
314	20			80	0.995493
316	20			80	0.995493
317		80	20		0.995493
318		20	80		0.995493
321	20	80			0.995493
322	80		20		0.995493
327		20		80	0.995493
328			20	80	0.995493
329	20			80	0.995493
331	80		20		0.995493
350		33		66	0.997452
474	16			83	0.994512
475			16	83	0.994512
478		83	16		0.994512
479	16			83	0.994512
480		14	85		0.993533
487	14		85		0.993533
488	14			85	0.993533
493	14	85			0.993533
498	85	14			0.993533
511			16	83	0.994512
513		83		16	0.994512
515	16		83		0.994512
520	83		16		0.994512
522			16	83	0.994512
523		83	16		0.994512
530	83		16		0.994512
533	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain