SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140436

Length: 492 nt

UniGene Fasta

>sp_v3.0_unigene140436
CGTCGTGACCTTGGCTGTCACTCGGCTGGAATTATGTATGTTCCCCGGCTTCCGCTGTGTCTTTCTTCGTGCTCTTTGCTGTACTGGTGTTACCCTCAGCCCAGGGTCAAGGACTCGATGCATGGTCTCAGTTACAGGGTTATAGTTTCTCTTCCGCTGCGGATTCCGGGGGAGGGCAGGGTTCATCTCCAGAGGACCCGTGAATTACCTATCAAGGCAGTTTGATGAACTTCCAACCAGATTTCCTCGCTCGGTATGATCCGGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGTCTTGCTTTCCCGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTTTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAAT

Ace file of the UniGene sp_v3.0_unigene140436

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA	-	-	1.0e-35	96%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine).	-	-	0.0	96%
Sma3	Transport inhibitor response 1-like protein	-	-	2.643e-09	-

Source	Gene names
Sma3	AFB2; AFB3; At1g12820; At3g26810; At4g24390; At5g49980; F13K23.7; FBL5; FBL6; FBL7; FBL8; FBX14; GSVIVT00015144001; GSVIVT00037929001; GSVIVT00038095001; K9P8.12; LRF2; MDJ14.12; POPTRDRAFT_568304; POPTRDRAFT_798788; POPTRDRAFT_800382; POPTRDRAFT_831460;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	auxin binding	GO:0010011	Molecular Function	-
Sma3	response to molecule of bacterial origin	GO:0002237	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-
Sma3	Leucine-rich repeat 2	IPR013101	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49980.1	AFB5 auxin F-box protein 5 chr5:20334420-20336531 REVERSE LENGTH=619	9.0e-25	65%
RefSeq	Arabidopsis thaliana	NP_568718.1	transport inhibitor response 1-like protein [Arabidopsis thaliana]	1.0e-24	65%
RefSeq	Populus trichocarpa	XP_002306554.1	f-box family protein [Populus trichocarpa]	6.0e-24	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C9EHS9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 338 aas, your sequence is shorter than subject: 163 - 585

Fln protein: VVTLAVTRLELCMFPGFRCVFLRALCCTGVTLSPGSRTRCMVSVTGL*FLFRCGFRGRAGFISRGPVNYLSRQFDELPTRFPRSV*SGQLTTLDLNEDEIHDNGEDWLSCFPETLTSLRSLCFDCLEGPINFDALERLVARCPFLKKLRLNRNVSIVQLQRLI

Protein Length: 164

Fln nts: CGTCGTGACCTTGGCTGTCACTCGGCTGGAATTATGTATGTTCCCCGGCTTCCGCTGTGTCTTTCTTCGTGCTCTTTGCTGTACTGGTGTTACCCTCAGCCCAGGGTCAAGGACTCGATGCATGGTCTCAGTTACAGGGTTATAGTTTCTCTTCCGCTGCGGATTCCGGGGGAGGGCAGGGTTCATCTCCAGAGGACCCGTGAATTACCTATCAAGGCAGTTTGATGAACTTCCAACCAGATTTCCTCGCTCGGTATGATCCGGGCAATTGACCACACTTGATTTGAATGAGGACGAAATACATGATAATGGAGAAGATTGGCTGTCTTGCTTTCCCGAGACTTTGACGTCTCTAAGATCTCTTTGTTTTGATTGTTTGGAGGGCCCAATAAATTTTGATGCACTTGAAAGATTAGTTGCAAGATGCCCCTTTCTGAAGAAGCTCAGGCTAAATAGAAATGTTTCTATAGTGCAGTTACAAAGGTTGATAAT

Fln Alignment:

AllPine_a_rep_c100232___QLTTLDLNEDEIHDNGEDWLSCFPETLTSLRSLCFDCLEGPINFDALERLVARCPFLKKLRLNRNVSIVQLQRLI
C9EHS9________________QLTTLDLNEDEIHDNGEDWLACFPETLTSLRSLCFDCLEGPVNFDALERLVARCPSLKKLRLNRNVSIVQLQRLI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
185	16	83			0.994512
254		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain