SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140434

Length: 802 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene140434 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate kinase n=2 Tax=Picea sitchensis RepID=A9NUL1_PICSI	-	-	0.0	87%
FL-Next	sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Pyruvate kinase	-	-	3.92223e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.4-	-	0.0	-

Source	Gene names
Sma3	AT3G52990; At2g36580; At3g52990; CHLREDRAFT_118203; F8J2_160; GSVIVT00000677001; GSVIVT00010814001; GSVIVT00021709001; LOC_Os11g05110; LOC_Os11g10980; LOC_Os12g05110; MICPUCDRAFT_16253; MICPUN_100158; MtrDRAFT_AC139525g8v2; Os11g0148500; Os11g0216000; Os1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	pyruvate kinase activity	GO:0004743	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52990.1	Pyruvate kinase family protein chr3:19649046-19652237 FORWARD LENGTH=527	71%
RefSeq	Arabidopsis thaliana	NP_566976.1	pyruvate kinase [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002326407.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
216		80		20	0.995493
221	20		80		0.995493
231		80		20	0.995493
253	20		80		0.995493
261		80		20	0.995493
277	20		80		0.995493
281		80		20	0.995493
291	80		20		0.995493
292		80		20	0.995493
295		80		20	0.995493
330		33	66		1.0
351	80	20			0.995493
354	20	80			0.995493
356		20		80	0.995493
357		20		80	0.995493
363		20		80	0.995493
377	50		50		1.0
403			80	20	0.995493
409	75		25		0.996474
418	33	66			0.997452
430	33	66			1.0
434	50		50		1.0
461	40	40			1.0
472		83		16	0.994512
476	40		60		1.0
483		66		33	1.0
501	20		80		0.995505
504	20		80		0.995494
654	66		33		0.997452
696		25		75	0.996475
697		25		75	0.996477
698		25	75		0.996475
699		25		75	0.996475
700	75	25			0.996475
701		25	50		0.995534
702		33		66	0.997452
704	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain