SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140417

Length: 1079 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene140417

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate kinase n=2 Tax=Picea sitchensis RepID=A9NUL1_PICSI	-	-	88%
FL-Next	sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Pyruvate kinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.4-	-	0.0	-

Source	Gene names
Sma3	AT3G52990; At2g36580; At3g04050; At3g25960; At3g52990; At3g55650; At3g55810; At4g26390; At5g08570; At5g56350; At5g56350/MCD7.8; At5g63680; CHLREDRAFT_118203; CHLREDRAFT_136854; CHLREDRAFT_196263; F1I16_220; F1I16_60; F8J2_160; GSVIVT00000671001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	pyruvate kinase activity	GO:0004743	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G36580.1	Pyruvate kinase family protein chr2:15339253-15342781 FORWARD LENGTH=527	75%
RefSeq	Arabidopsis thaliana	NP_565850.1	pyruvate kinase-like protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002326407.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRL0

Fln msg: your sequence is shorter than subject: 256 - 336

Fln protein: CGWYYYFTGSFRNRSSTREGILFQKAAVHKCNMAGKPVVITRVVDSMSGNLRPTRAEATDVANAVLDGTDAILLGAETYRGLYPVQTISIVGKICAEAEKVYNQAIHFKRTMKYSNEPTSHLESIATSAVSSAIKVNASVIVVFTATGQTARLIAKYRPTMPVLSVVIPRLTSNQLRWSFTGAFQARQTLVVRGVFPMLADPQHLAESINETNESVLNLALDHGKTTGLIKPHDRIVVCQKIGNSAVVKIVELED*

Protein Length: 257

Fln nts: AATGTGGATGGTATTATTATTTCACGGGGTCATTTAGGAATAGATCTTCCACCAGAGAAGGTATTTTATTCCAGAAAGCTGCTGTGCACAAGTGTAACATGGCTGGAAAGCCTGTTGTAATCACACGTGTTGTTGACAGTATGTCGGGTAATTTACGTCCGACACGTGCAGAAGCAACTGATGTTGCAAATGCTGTTCTGGATGGTACAGATGCAATTCTGTTAGGTGCTGAAACTTACCGTGGATTATACCCTGTTCAGACTATCTCAATCGTAGGAAAGATCTGTGCAGAAGCGGAGAAAGTGTACAATCAAGCTATTCATTTTAAGAGGACTATGAAATATAGCAATGAACCAACGAGTCACTTGGAATCTATTGCAACTAGCGCAGTAAGTTCTGCAATCAAAGTGAATGCTTCGGTTATTGTTGTATTCACAGCAACTGGACAAACTGCTAGGTTAATAGCAAAGTACCGTCCTACCATGCCAGTTTTATCCGTTGTCATCCCAAGATTGACATCAAATCAGTTGAGATGGAGCTTTACTGGTGCATTTCAAGCAAGACAGACACTTGTAGTTAGGGGAGTTTTCCCTATGCTTGCAGATCCTCAACATCTGGCAGAATCAATTAATGAGACGAATGAGTCTGTTTTGAATCTTGCATTGGATCATGGTAAAACAACAGGGTTAATTAAACCTCATGATCGAATCGTTGTATGCCAAAAAATAGGGAACTCGGCTGTTGTTAAGATAGTCGAGCTTGAAGACTAG___TCTGATACAGAAAGCAGTTGACAGATTTTGTCTCGTGTACAGAATATCATTAGGAATATGCCAAATTTTCTTAGTTATATCTGAACAGTGAATTTCGACGAGTTTTTCTTTTGCTTTTCAAATTCATCGGATAATCCATTGAAATTCACATGGATTTTATTGAGGAACCTGTAACAGTGAATTTCTAAAAGTATTTACTTAGATTAATTTATTTTAGATGAAAAGCTAGGTCCATTATTTATGAAATTTTGTTGTGTAACCTGCGGAATGAAAGTTGAACGATTAATATATCGTTTTCCCCGAAAATCT

Fln Alignment:

AllPine_a_rep_c100113___LFQKAAVHKCNMAGKPVVITRVVDSMSGNLRPTRAEATDVANAVLDGTDAILLGAETYRGLYPVQTISIVGKICAEAEKVYNQAIHFKRTMKYSNEPTSHLESIATSAVSSAIKVNASVIVVFTATGQTARLIAKYRPTMPVLSVVIPRLTSNQLRWSFTGAFQARQTLVVRGVFPMLADPQHLAESINETNESVLNLALDHGKTTGLIKPHDRIVVCQKIGNSAVVKIV
C0PRL0________________LFQKAAVHKCNMAGKPAVVTRVVDSMSGNLRPTRAEATDVANAVLDGTDAILLGAETFRGLYPFETISIVGKICAEAEKVYNQAVYFKRTMKHSNEPMSHLESIATTAVSAAINVKASVIVVFTASGRTARLIAKYRPTMPVLSVVIPRLTTNQLRWSFTGAFQARQTLIVRGVFPMLADPRHSAESINATNESVLEIALDHGKTAGLIKPHDRIVVCQKVGDSAVVKIL

SNPs (tot: 4)

Position	C %	G %	T %	Probability
648	20		80	0.995493
725	20		80	0.995493
799		12	87	0.992554
877	87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain