SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140263

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene140263
CGTCGTGACCTTGGCTGTCACTCAGGAGTTTGGTGAATCCGGGTGAGAAAGTGATTGTGGACCCTATGCCTGAACCTGTCAATGGACTGCCCATCAAACTCGTCCCACACCAATAAGTGAGGGCTTTCCTTTAGGGTCAAGATACCTGTCCATCCTAGCTTTAATTTCGTAGTCGTTTTTATTCCATATTGGTCATCCATTGTAGTGCTCTATGTAGATGACTATTTCATATTAATGTCGTCAGATTAGCAATATGCGGAGTCGAAATCTGACATATAAATGGTTGTAGTTTATTTATTGTCTCAGATATTATGGCTATCTTGTGAACTTAAATAAGATTAAGAAATATATATTTTAAGTTGATTCATATTTTAAAATTT

Ace file of the UniGene sp_v3.0_unigene140263

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	2.0e-07	92%
FL-Next	sp=Cytochrome P450 716B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	CYP716B1; CYP716B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q50EK0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 38 - 497

Fln protein: S*PWLSLRSLVNPGEKVIVDPMPEPVNGLPIKLVPHQ*

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGTTTGGTGAATCCGGGTGAGAAAGTGATTGTGGACCCTATGCCTGAACCTGTCAATGGACTGCCCATCAAACTCGTCCCACACCAATAA___GTGAGGGCTTTCCTTTAGGGTCAAGATACCTGTCCATCCTAGCTTTAATTTCGTAGTCGTTTTTATTCCATATTGGTCATCCATTGTAGTGCTCTATGTAGATGACTATTTCATATTAATGTCGTCAGATTAGCAATATGCGGAGTCGAAATCTGACATATAAATGGTTGTAGTTTATTTATTGTCTCAGATATTATGGCTATCTTGTGAACTTAAATAAGATTAAGAAATATATATTTTAAGTTGATTCATATTTTAAAATTT

Fln Alignment:

AllPine_a_rep_c99607___SLVNPGEKVIVDPMPEPVNGLPIKLVPH
Q50EK0________________NLVNPGEKVIVDPMPAPVNGLPIKLVPH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain