SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene140029

Length: 444 nt

UniGene Fasta

>sp_v3.0_unigene140029
CGTCGTGACCTTGGCTGTCACTCAATTTTCTTTAAATGTTCCGGATGGTTTAATCAGGATGTTTTGTAATTCCAATGGTGCTTTGGTATTAGCTTCTATTCTATTAGCCTTGAAAAGCGTGCTGTAGCCTTGCCCGTTCACGTTTTTCTTCAGGCTTTATTTGAGCCGTTTAGGTACAAATGTCAATCTAGATGCTTTGGACGGCGAGCTGATTTCTTTCTGCCTTCAATCTTTTTTTTCCAGCTCTATTCCAGTCTCTGCTGTACGAAGCCTGCGGGAGAACAGTGAATCCTGTAAACGGAGCTGTGGGACTGCTATGGAACGGAAACTGGCAACTCTGTCAGGCAGCGGTCGAGACGGTCCTGAAGGGAGGAACTCTTCGCCCGCCGCAGTCATCGTCTGTGATTCCGACGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene sp_v3.0_unigene140029

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF260 domain containing protein	-	-	3.0e-13	40%
FL-Next	sp=LOB domain-containing protein 37; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%
Sma3	LOB domain-containing protein, putative	-	-	9.382e-13	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00019643001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb0005G07.123; OSJNBb0011J16.21; Os01g0129

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G67420.1	LBD37, ASL39 LOB domain-containing protein 37 chr5:26904576-26905415 REVERSE LENGTH=250	4.0e-22	84%
RefSeq	Arabidopsis thaliana	NP_201543.1	LOB domain-containing protein 37 [Arabidopsis thaliana]	6.0e-22	84%
RefSeq	Populus trichocarpa	XP_002306497.1	predicted protein [Populus trichocarpa]	3.0e-22	88%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9FN11

Fln msg: Distance to subject end: 122 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 77 - 250

Fln protein: FLSAFNLFFPALFQSLLYEACGRTVNPVNGAVGLLWNGNWQLCQAAVETVLKGGTLRPPQSSSVIPTFAVSDRPLRL

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTTTAAATGTTCCGGATGGTTTAATCAGGATGTTTTGTAATTCCAATGGTGCTTTGGTATTAGCTTCTATTCTATTAGCCTTGAAAAGCGTGCTGTAGCCTTGCCCGTTCACGTTTTTCTTCAGGCTTTATTTGAGCCGTTTAGGTACAAATGTCAATCTAGATGCTTTGGACGGCGAGCTGATTTCTTTCTGCCTTCAATCTTTTTTTTCCAGCTCTATTCCAGTCTCTGCTGTACGAAGCCTGCGGGAGAACAGTGAATCCTGTAAACGGAGCTGTGGGACTGCTATGGAACGGAAACTGGCAACTCTGTCAGGCAGCGGTCGAGACGGTCCTGAAGGGAGGAACTCTTCGCCCGCCGCAGTCATCGTCTGTGATTCCGACGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

AllPine_a_rep_c99297___QSLLYEACGRTVNPVNGAVGLLWNGNWQLCQAAVETVLKGGTLRP
Q9FN11________________QSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain