SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139948

Length: 338 nt

UniGene Fasta

>sp_v3.0_unigene139948
CGTCGTGACCTTGGCTGTCACAACAGAAGTATATTGAGAAAAGACTCTTAAGGTTTGGTTTGAACAATGTGCAGCCTGTTTCAGTCCCTTTTGCTTCCCATTTTAAGCTTTCTTTGAGTTTATTTCCTAATACAAATGAAGAAAGGAATATATGTCTCGAATTACATATGCCAATGTAGTAGGTTGTTTGATGTATGAGATGGTGTGTACTCGACCAGATATTTCACATGCAGTTGGGGTTGTCAGCATGTATATGGAAAATCCAGGAAAAGAACACTAGTTAGTAGTGAAATGGGTGCGTCGGTATTTGAAAGGCATAAGTGATTATGTATTACTTA

Ace file of the UniGene sp_v3.0_unigene139948

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC	-	-	7.0e-26	63%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	40%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	2.033e-11	-

Source	Gene names
Sma3	H0515C11.7; LOC_Os03g46450; LOC_Os10g01450; LOC_Os10g18420; LOC_Os11g03830; LOC_Os11g05840; LOC_Os11g17390; LOC_Os12g01780; LOC_Os12g23320; LOC_Os12g31920; LOC_Os12g34770; LYC_68t000004; OSIGBa0146N20.7; OSJNAb0008A05.17; OSJNBa0033G05.13; OSJNBa0056E06.5

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 143 and 143, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 116 aas, your sequence is shorter than subject: 112 - 542

Fln protein: S*PWLSQQKYIEKRLLRFGLNNVQPVSVPFASHFKLSLSLFPNTNExxEYMSRITYANVVGCLMYEMVCTRPDISHAVGVVSMYMENPGKEH*LVVKWVRRYLKGISDYVLL

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACAACAGAAGTATATTGAGAAAAGACTCTTAAGGTTTGGTTTGAACAATGTGCAGCCTGTTTCAGTCCCTTTTGCTTCCCATTTTAAGCTTTCTTTGAGTTTATTTCCTAATACAAATGAAxxxxxxGAATATATGTCTCGAATTACATATGCCAATGTAGTAGGTTGTTTGATGTATGAGATGGTGTGTACTCGACCAGATATTTCACATGCAGTTGGGGTTGTCAGCATGTATATGGAAAATCCAGGAAAAGAACACTAGTTAGTAGTGAAATGGGTGCGTCGGTATTTGAAAGGCATAAGTGATTATGTATTACTTA

Fln Alignment:

AllPine_a_rep_c99185___WLSQQKYIEKRLLRFGLNNVQPVSVPFASHFKLSLSLFPNTNEEKEYMSRITYANVVGCLMYEMVCTRPDISHAVGVVSMYMENPGKEH*LVVKWVRRYLKGISDYVL
Q9M5J7________________WLNQRKYVETILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain