SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139808

Length: 124 nt

UniGene Fasta

>sp_v3.0_unigene139808
CGTCGTGACCTTGGCTGTCACTCATCCTTTAGCAACCGGCTTTACAATTTTACAGGAAAGGGAGATATGGATCGATCCTTGAACAAGCATTATGCAGCTAAACTGAAGTTACAATGCAAGCCAG

Ace file of the UniGene sp_v3.0_unigene139808

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase 27 [Arabidopsis thaliana] sp\|Q43735.1\|PER27_ARATH RecName: Full=Peroxidase 27; Short=Atperox P27; AltName: Full=ATP12a; AltName: Full=PRXR7; Flags: Precursor gb\|AAF26155.1\|AC008261_12 putative peroxidase [Arabidopsis thaliana] emb\|CAA66963.1\| p	-	-	2.0e-05	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 41 - 324

Fln protein: RRDLGCHSSFSNRLYNFTGKGDMDRSLNKHYAAKLKLQCKP

Protein Length: 42

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTTTAGCAACCGGCTTTACAATTTTACAGGAAAGGGAGATATGGATCGATCCTTGAACAAGCATTATGCAGCTAAACTGAAGTTACAATGCAAGCCAG

Fln Alignment:

AllPine_a_c99002___SSFSNRLYNFTGKGDMDRSLNKHYAAKLKLQCKP
A9P1P4________________NSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKCKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain