SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139699

Length: 498 nt

UniGene Fasta

>sp_v3.0_unigene139699
CGTCGTGACCTTGGCTGTCACTCATTTACTTCAACCTGGATTACCTTCAAGAGCTTGTGCTTACCGGAAAATTCGATGAGGCCGAGAGATACTTGTCGGGCTTTATTAAAGTAGAGGACAACAAGCATTCTACTAAGATATTCTTTGAGATAAGGAAGCAGAAATATCTAGAAGCACTGGACAGGAAAGATCTGTTCACAGCTATGAACATACTTAACAATGACCTTAAAGTGTTCAGAAATATCTCTAAAGAAGTCTACAGAGAGATAGCAGAACTGATTACATTGGAAGACTTCAGGGAAAACGAACAGCTTAAACAGTACAGGGATACACAGTCTCAACGAGTTTCTATGTTTCGAGTGATTAGTTCAATTGTACAATCCAACCCTTTAATCTGCAACAAGTTGACTTTTCCCAGCATTAAAGCTTGCAGGCTTAGGGCCCTCATCAATCAAAGTCTTAATTTGCAGCATACGCTTTGCAAAAACCCTCATTCGC

Ace file of the UniGene sp_v3.0_unigene139699

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Topless-related protein 2 n=2 Tax=Arabidopsis RepID=TPR2_ARATH	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	WD-repeat protein, putative	-	-	7.0e-12	-

Source	Gene names
Sma3	At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; GSVIVT00032753001; GSVIVT00032754001; GSVIVT00032755001; LOC_Os03g14980; MtrDRAFT_AC147963g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16830.1	TPR2 TOPLESS-related 2 chr3:5731709-5737531 FORWARD LENGTH=1131	60%
RefSeq	Arabidopsis thaliana	NP_188306.2	Topless-related 2 protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002330180.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV83

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 109 aas, your sequence is shorter than subject: 165 - 300

Fln protein: S*PWLSLIYFNLDYLQELVLTGKFDEAERYLSGFIKVEDNKHSTKIFFEIRKQKYLEALDRKDLFTAMNILNNDLKVFRNISKEVYREIAELITLEDFRENEQLKQYRDTQSQRVSMFRVISSIVQSNPLICNKLTFPSIKACRLRALINQSLNLQHTLCKNPHS

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTACTTCAACCTGGATTACCTTCAAGAGCTTGTGCTTACCGGAAAATTCGATGAGGCCGAGAGATACTTGTCGGGCTTTATTAAAGTAGAGGACAACAAGCATTCTACTAAGATATTCTTTGAGATAAGGAAGCAGAAATATCTAGAAGCACTGGACAGGAAAGATCTGTTCACAGCTATGAACATACTTAACAATGACCTTAAAGTGTTCAGAAATATCTCTAAAGAAGTCTACAGAGAGATAGCAGAACTGATTACATTGGAAGACTTCAGGGAAAACGAACAGCTTAAACAGTACAGGGATACACAGTCTCAACGAGTTTCTATGTTTCGAGTGATTAGTTCAATTGTACAATCCAACCCTTTAATCTGCAACAAGTTGACTTTTCCCAGCATTAAAGCTTGCAGGCTTAGGGCCCTCATCAATCAAAGTCTTAATTTGCAGCATACGCTTTGCAAAAACCCTCATTCGC

Fln Alignment:

AllPine_a_c98857___SLIYFNLDYLQELVLTGKFDEAERYLSGFIKVEDNKHSTKIFFEIRKQKYLEALDRKDLFTAMNILNNDLKVFRNISKEVYREIAELITLEDFRENEQLKQYRDTQSQRVSMFRVISSIVQSNPLICNKLTFPSIKACRLRALINQSLNLQHTLCKNP
A9NV83________________SMFFFNMKYFEDQVQAGEWEEVERYLSGFTKVEDNCYSMKLFFEIRKQKYLEALDKQDREKALEILVKDLKVFSSFNEELFKQITQLLPLDNFRENAQLSKYGDTKSARNILLLELKKLLEANPMFSDKLQFPALKAARLRTLINQSLNWQHQLCKNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain