SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139287

Length: 382 nt

UniGene Fasta

>sp_v3.0_unigene139287
CGTCGTGACCTTGGCTGTCACTCATTTCTAGATCCTTTGACATACACTCACTTCACAACCGAGGGTGAAGTAGAGTTTAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTCAGCACTGAGGATATAATGCATCCAAAGACTAAGAGCATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTAATGGTGAATTGTTTCCATGCTAGCTGAGCTTTGTTAAAGGTTTTTTCGATTCAAATGGTCTTCTTCTTAATGTCTCCAGGGAGATCCTTCAAGAAAGCCGCATTGTTCGTATAATGAAGATGCGTCTTGTACAATAGACATTTGATATGATTCAGGGCATTGTGCAAAGTGAAAATAAAGATGATTACA

Ace file of the UniGene sp_v3.0_unigene139287

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat-shock protein [Secale cereale]	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Putative heat-shock protein	-	-	6.076e-07	-

Source	Gene names
Sma3	At2g04030; At3g07770; CHLREDRAFT_154398; CHLREDRAFT_97057; F17A17.11; GSVIVT00021159001; GSVIVT00029132001; HSP90; HSP90B; HSP90C; Hsp90; MICPUCDRAFT_14003; MICPUCDRAFT_49037; MICPUN_55581; MICPUN_62210; MLP3.22; OSTLU_23829; Os08g0487800; Os09g0474300; O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Sterile alpha motif, type 2	IPR011510	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 Chaperone protein htpG family protein chr2:1281983-1285909 FORWARD LENGTH=780	76%
RefSeq	Arabidopsis thaliana	NP_178487.1	Chaperone protein htpG family protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002311417.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 342 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 110 - 466

Fln protein: RRDLGCHSFLDPLTYTHFTTEGEVEFRSVLYIPGMAPLSTEDIMHPKTKSIRLYVKRVFISDDFNGELFPC*LSFVKGFFDSNGLLLNVSREILQESRIVRIMKMRLVQ*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTAGATCCTTTGACATACACTCACTTCACAACCGAGGGTGAAGTAGAGTTTAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTCAGCACTGAGGATATAATGCATCCAAAGACTAAGAGCATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTAATGGTGAATTGTTTCCATGCTAGCTGAGCTTTGTTAAAGGTTTTTTCGATTCAAATGGTCTTCTTCTTAATGTCTCCAGGGAGATCCTTCAAGAAAGCCGCATTGTTCGTATAATGAAGATGCGTCTTGTACAATAGACATTTGATATGATTCAGGGCATTGTGCAAAGTGAAAATAAAGATGATTACA

Fln Alignment:

AllPine_a_rep_c98300___PLTYTHFTTEGEVEFRSVLYIPGMAPLSTEDIMHPKTKSIRLYVKRVFISDDFNGELFPC*LSFVKGFFDSNGLLLNVSREILQESRIVRIMKMRLVQ*TFDMIQGIVQSE
A9NUB7________________PLAWSHFTAEGDVEFKSILFIPPKAPQDLYESYYNAKANIKLYVRRVFISDEFE-ELLPKYLGFLMGIVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIAEED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain