SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139226

Length: 296 nt

UniGene Fasta

>sp_v3.0_unigene139226
CGTCGTGACCTTGGCTGTCACCCATCTTTACGTGTGGCCTACATTGATGAAAGAGAAGAGGGGGAGAATGAGAAATCTAAGGTCTATTATTCTGTCCTTGTCAAAGCAGTTAATGGCGTTGACCAGATAATATACCAAATCAAGCTGCCTGGTAATCCTATTCTTGGTGAGGGGAGCCAGAAAATCAGAACCATGCTATTATTTCACTCGTGGAGAGCTCTTCAAACAATTGATATGAACCAGGATAACTATCTAGAAGAAGCATTCAAAAATGCGGAACTTGCTGGAAGAATTTC

Ace file of the UniGene sp_v3.0_unigene139226

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glucan synthase-like protein [Arabidopsis thaliana]	-	-	5.0e-20	60%
FL-Next	sp=Putative callose synthase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	1,3-beta-glucan synthase	-	-	3.743e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At3g07160; At3g14570; At3g59100; At5g13000; At5g36870; CALS1; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CALS9; CFL1; F12K11.17; F13J11.3; F17J16.150; F22D22.29; F3F20.1; F5H8.14; GSL1; GSL10; GSL11; GSL12

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14570.1	ATGSL04, gsl04, atgsl4 glucan synthase-like 4 chr3:4892643-4902628 FORWARD LENGTH=1976	7.0e-25	60%
RefSeq	Arabidopsis thaliana	NP_001189893.1	callose synthase [Arabidopsis thaliana]	9.0e-25	60%
RefSeq	Populus trichocarpa	XP_002328472.1	predicted protein [Populus trichocarpa]	3.0e-23	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LUD7

Fln msg: Distance to subject end: 584 aas, your sequence is shorter than subject: 98 - 1976

Fln protein: RRDLGCHPSLRVAYIDEREEGENEKSKVYYSVLVKAVNGVDQIIYQIKLPGNPILGEGSQKIRTMLLFHSWRALQTIDMNQDNYLEEAFKNAELAGRI

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACCCATCTTTACGTGTGGCCTACATTGATGAAAGAGAAGAGGGGGAGAATGAGAAATCTAAGGTCTATTATTCTGTCCTTGTCAAAGCAGTTAATGGCGTTGACCAGATAATATACCAAATCAAGCTGCCTGGTAATCCTATTCTTGGTGAGGGGAGCCAGAAAATCAGAACCATGCTATTATTTCACTCGTGGAGAGCTCTTCAAACAATTGATATGAACCAGGATAACTATCTAGAAGAAGCATTCAAAAATGCGGAACTTGCTGGAAGAATTTC

Fln Alignment:

AllPine_a_rep_c98208___HPSLRVAYIDEREEGENE-KSKVYYSVLVKAVNGVDQIIYQIKLPGNPILGEGSQKIRT-MLLFHSWRALQTIDMNQDNYLEEAFKNAEL
Q9LUD7________________YPSLRVAYVEEREEIVLDVPKKVYYSILVKAVNGFDQEIYRVKLPGPPNIGEGKPENQNHAIVFTRGEALQTIDMNQDHYLEEAFKMRNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain