SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139207

Length: 291 nt

UniGene Fasta

>sp_v3.0_unigene139207
CGTCGTGACCTTGGCTGTCGTGATCTTTTCTGTTTTCATCTCTTTTCAGGATTCTTCATTCCTAAACCGAGAATCCCCAAATGGTGGATTTGGTACTACTGGATATGCCCAGTTGCCTGGACTGTCTATGGCCTCATTGCCTCACAGTATGGCGACGTTACAACCCTGATAGACGTAGTGGGCGAGGGACCAAAACCACTGAATAAATTCGTGGAGGATTACTTCGGATACAAGCATGATTTCTTGGGTGTAGTGGGCGGAGTCCTGGTGGCGTTTTCTGTTTTCTTTGCA

Ace file of the UniGene sp_v3.0_unigene139207

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pleiotropic drug resistance protein 15 n=4 Tax=Oryza sativa RepID=PDR15_ORYSJ	-	-	3.0e-25	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	ATP-binding cassette transporter, putative	-	-	1.18e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	2.271e-19	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	6.541e-06	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g59870; At2g26910; At3g16340; At4g15215; At4g15220/At4g15230; F12C20.5; F23H11.19; F9L1.15; FCAALL.241; GSVIVT00012684001; GSVIVT00016819001; GSVIVT00019709001; GSVIVT00022041001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00024107001

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	3.0e-30	67%
RefSeq	Arabidopsis thaliana	NP_176196.1	ABC transporter G family member 36 [Arabidopsis thaliana]	4.0e-30	67%
RefSeq	Populus trichocarpa	XP_002303308.1	predicted protein [Populus trichocarpa]	6.0e-29	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 97 - 471

Fln protein: RRDLGCRDLFCFHLFSGFFIPKPRIPKWWIWYYWICPVAWTVYGLIASQYGDVTTLIDVVGEGPKPLNKFVEDYFGYKHDFLGVVGGVLVAFSVFFA

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCGTGATCTTTTCTGTTTTCATCTCTTTTCAGGATTCTTCATTCCTAAACCGAGAATCCCCAAATGGTGGATTTGGTACTACTGGATATGCCCAGTTGCCTGGACTGTCTATGGCCTCATTGCCTCACAGTATGGCGACGTTACAACCCTGATAGACGTAGTGGGCGAGGGACCAAAACCACTGAATAAATTCGTGGAGGATTACTTCGGATACAAGCATGATTTCTTGGGTGTAGTGGGCGGAGTCCTGGTGGCGTTTTCTGTTTTCTTTGCA

Fln Alignment:

AllPine_a_rep_c98181___FHLFSGFFIPKPRIPKWWIWYYWICPVAWTVYGLIASQYGDVTTLIDVVGEGPKPLNKFVEDYFGYKHD
A9NW55________________FNLFSGFLITRPQLPRWWVWYYWICPLAWTLNGLVTSQYGDMRKKISIDGKPQQAIEDFLKDYFGFQRD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain