UniGene Name: sp_v3.0_unigene139156
Length: 198 nt
UniGene Fasta |
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>sp_v3.0_unigene139156
C |
Ace file of the UniGene sp_v3.0_unigene139156 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | WD-repeat protein, putative | - | - | 2.0e-17 | 70% |
FL-Next | sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 64% |
Sma3 | WD-repeat protein, putative | - | - | 4.924e-12 | - |
Source | Gene names |
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Sma3 | At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; Os01g0254100; Os03g0254700; Os08g0162100; OsI_01216 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | transcription repressor activity | GO:0016564 | Molecular Function | 0.0 | - |
Sma3 | protein homodimerization activity | GO:0042803 | Molecular Function | 0.0 | - |
Sma3 | response to auxin stimulus | GO:0009733 | Biological Process | 0.0 | - |
Sma3 | xylem and phloem pattern formation | GO:0010051 | Biological Process | 0.0 | - |
Sma3 | primary shoot apical meristem specification | GO:0010072 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Histidine phosphatase superfamily, clade-2 | IPR000560 | - | 0.0 | - |
Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
Sma3 | LisH dimerisation motif | IPR006594 | - | 0.0 | - |
Sma3 | CTLH, C-terminal LisH motif | IPR006595 | - | 0.0 | - |
Sma3 | LisH dimerisation motif, subgroup | IPR013720 | - | 0.0 | - |
Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
Sma3 | F-box associated interaction domain | IPR017451 | - | 0.0 | - |
Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
Sma3 | Cytochrome b5, heme-binding site | IPR018506 | - | 0.0 | - |
Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
Sma3 | IPR019782 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT3G15880.2 | - | 2.0e-21 | 64% |
RefSeq | Arabidopsis thaliana | NP_001189905.1 | Topless-related protein 4 [Arabidopsis thaliana] | 3.0e-21 | 64% |
RefSeq | Populus trichocarpa | XP_002324641.1 | predicted protein [Populus trichocarpa] | 9.0e-22 | 68% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q27GK7
Fln msg: Distance to subject end: 540 aas, your sequence is shorter than subject: 66 - 1135
Fln protein:
R
Protein Length:
67
Fln nts:
C
Fln Alignment:
AllPine_a_rep_c98112___LYDPPTCKIDYDAPCHGCTAMAYSADGSRLFTCGTNKEGESYLVEWEESDGAIKRRY
Q27GK7________________LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTY
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain