SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene139031

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene139031
GTACAATATTAGAGGAGATTTATTGCCAGTTTCACTATTATTGCAGCACCTTTACACACATTGACAAGTGTAAAGCAAGTCTTTCAATGGGGAGGAAAGTAGTAGAAGTCCTTCAAGAAATTGAAAGAAAAGATCAGCACCACACCAGTCTTGGCCTTACCAGATTTCCAACAGCCATTCTAGATCGAGACAGATGCCAATGGATATGCCATGGGAGCTATATTGATGCAACAAAATAAGATGATATGTTACCATTCAGATAAGTTCTCTTAGGCTGTGATAAACTATCCCACCTATGACAAGGAGTTATATGCCTTGGTCCAGAGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene139031 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein (Fragment) n=1 Tax=Panicum virgatum RepID=A4GMN5_9POAL	-	-	5.0e-19	47%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	50%
Sma3	Retrotransposon protein, putative, Ty3-gypsy sub-class	-	-	1.573e-07	-

Source	Gene names
Sma3	19.t00005; AT4g07850; F5K24.1; LOC_Os11g14330; LOC_Os11g22580; LOC_Os12g15350; SDM1_58t00003; SDM1_58t00004;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1N773

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 447 aas, your sequence is shorter than subject: 110 - 1207

Fln protein: VQY*RRFIASFTIIAAPLHTLTSVKQVFQWGGK**KSFKKLKEKISTTPVLALPDFQQPF*IETDANGYAMGAILMQQNKMICYHSDKFS*AVINYPTYDKELYALVQS*

Protein Length: 111

Fln nts: GTACAATATTAGAGGAGATTTATTGCCAGTTTCACTATTATTGCAGCACCTTTACACACATTGACAAGTGTAAAGCAAGTCTTTCAATGGGGAGGAAAGTAGTAGAAGTCCTTCAAGAAATTGAAAGAAAAGATCAGCACCACACCAGTCTTGGCCTTACCAGATTTCCAACAGCCATTCTAGATCGAGACAGATGCCAATGGATATGCCATGGGAGCTATATTGATGCAACAAAATAAGATGATATGTTACCATTCAGATAAGTTCTCTTAGGCTGTGATAAACTATCCCACCTATGACAAGGAGTTATATGCCTTGGTCCAGAGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPine_a_rep_c97951___RRFIASFTIIAAPLHTLTSVKQVFQWGGXXXXXXXXXXXKISTTPVLALPDFQQPF*IETDANGYAMGAILMQQNKMICYHSDKFS*AVINYPTYDKELYALVQS
I1N773________________RRFVPNFSIIASPLNELVKKNVAFTWGEKQEQAFALLKEKLTKAPVLALPDFSKTFELECDASGVGVGAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYALIRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain