SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138662

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene138662
CGTCGTGACCTTGGCTGTCACTCATGGTTTTGGGTGAAAGAGAAACCCAATAATCAGATACTTAGCGTTACTGAAGAGGGACTTACTTGATTGGAGCCATGAATGCACTGGCGGCAACAAGTCGTAATTTCAGACAGGCATCTAGATTGCTGGGTTTAGATTCCAGGCTGGAAAAGAGTTTACTGATTCCATTTCGGGAAGTTAAGGGACTTTGAAAGATCCATTATCTTGAATGGAGAACTACTGATATGTCTTTAATGGTAGCTTTATGATTAAATGGGGAATTAATGATACATCCTTACTTCTTTATAACTTCCCACCCAGATCTTCCCTGTCATGGATTTTGCCAGTCAGCTTG

Ace file of the UniGene sp_v3.0_unigene138662

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutamate dehydrogenase 2 [Oryza sativa Japonica Group] gb\|EAY95032.1\| hypothetical protein OsI_16842 [Oryza sativa Indica Group]	-	-	2.0e-10	91%
FL-Next	sp=Glutamate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	0.0	80%
Sma3	Glutamate dehydrogenase	-	-	5.279e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate dehydrogenase.	EC:1.4.1.2	-	2.454e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250		2.454e-23	%
Sma3	Arginine and proline metabolism	00330		2.454e-23	%
Sma3	Nitrogen metabolism	00910		2.454e-23	%
Sma3	Metabolic pathways	01100		2.454e-23	%
Sma3	Glutamate dehydrogenase (NAD(P)(+)).	EC:1.4.1.3	-	3.476e-34	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	3.476e-34	%
Sma3	Arginine and proline metabolism	00330	3.476e-34	%
Sma3	D-Glutamine and D-glutamate metabolism	00471	3.476e-34	%
Sma3	Nitrogen metabolism	00910	3.476e-34	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	3.476e-34	%
Sma3	Metabolic pathways	01100	3.476e-34	%

Source	Gene names
Sma3	AT5G07440; At3g03910; At5g07440; At5g18170; F20H23.4; GDH; GDH1; GDH2; GDH3; GDHA; GDHB; GSH3; GSVIVT00014097001; GSVIVT00014102001; GSVIVT00014104001; GSVIVT00025474001; MRG7.13; OSJNBb0012J10.18; OSJNBb0038F03.5; OSJNBb0060J21.2; Os02g0650900; Os04g0543

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	glutamate dehydrogenase (NAD+) activity	GO:0004352	Molecular Function	-
Sma3	glutamate dehydrogenase [NAD(P)+] activity	GO:0004353	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	GO:0016639	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	regulation of nitrogen compound metabolic process	GO:0051171	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03910.1	GDH3 glutamate dehydrogenase 3 chr3:1006913-1008846 FORWARD LENGTH=411	1.0e-12	86%
RefSeq	Arabidopsis thaliana	NP_187041.1	glutamate dehydrogenase (NAD(P)+) [Arabidopsis thaliana]	1.0e-12	86%
RefSeq	Populus trichocarpa	XP_002339508.1	predicted protein [Populus trichocarpa]	3.0e-13	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IXC9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 324 aas, your sequence is shorter than subject: 39 - 411

Fln protein: MNALAATSRNFRQASRLLGLDSRLEKSLLIPFREVKGL*

Protein Length: 40

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTTGGGTGAAAGAGAAACCCAATAATCAGATACTTAGCGTTACTGAAGAGGGACTTACTTGATTGGAGCC_-_ATGAATGCACTGGCGGCAACAAGTCGTAATTTCAGACAGGCATCTAGATTGCTGGGTTTAGATTCCAGGCTGGAAAAGAGTTTACTGATTCCATTTCGGGAAGTTAAGGGACTTTGAAAGATCCATTATCTTGAATGGAGAACTACTGATATGTCTTTAATGGTAGCTTTATGATTAAATGGGGAATTAATGATACATCCTTACTTCTTTATAACTTCCCACCCAGATCTTCCCTGTCATGGATTTTGCCAGTCAGCTTG

Fln Alignment:

AllPine_a_rep_c97451___MNALAATSRNFRQASRLLGLDSRLEKSLLIPFREVK
D9IXC9________________MNALAATNRNFKRAARLLALDSKLEKSLLIPFREIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain