SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138581

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene138581
CGTCGTGACCTTGGCTGTCACTCATTTTAAATATTGGGCAGTCCGTTGTGACCTTCTTCCCTGTTTCTGTTTCAATGGCACAGACAATGGTTTTCCCGCTGTGTATATGTCGTATGCTGTACGGTCCGGGGATAGTTTGGCCAGCATTGCGATGTCATATGGCACAACTGTTACAGATCTCGTGGATGTGAATTCCTTGGGAAGCTTCCAGATTGCAGCAGGAGACATTATTGCAATACCACTGGCAGCCTGCTCATCAGACAATTTGAATTTGCCTTCAAATAGTGATCTACTTGTAGCAAATGGAAGCTATGCTGTTACTGCTGATCATTGTGTGCAATGCAGCT

Ace file of the UniGene sp_v3.0_unigene138581

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidoglycan-binding LysM domain-containing related protein n=1 Tax=Gossypioides kirkii RepID=B2ZAQ1_9ROSI	-	-	1.0e-27	58%
FL-Next	Isoform 2 of LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880	-	-	0.0	55%
Sma3	Erwinia induced protein 1	-	-	7.688e-17	-

Source	Gene names
Sma3	At1g21880; At1g77630; GSVIVT00015378001; GSVIVT00017669001; OJ1163_C07.33; Os02g0769200; Os09g0452200; OsI_09086; OsI_22104; OsI_31607; OsJ_08523; OsJ_20541; OsJ_29593; P0488D02.10; P0664C05.26; POPTRDRAFT_209872; POPTRDRAFT_643636; POPTRDRAFT_651402; RCO

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21880.2	LYM1 lysm domain GPI-anchored protein 1 precursor chr1:7680689-7682526 FORWARD LENGTH=416	1.0e-30	55%
RefSeq	Arabidopsis thaliana	NP_849697.1	LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana]	8.0e-31	55%
RefSeq	Populus trichocarpa	XP_002307431.1	predicted protein, partial [Populus trichocarpa]	1.0e-32	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93ZH0-2

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 115 - 316

Fln protein: VVTLAVTHFKYWAVRCDLLPCFCFNGTDNGFPAVYMSYAVRSGDSLASIAMSYGTTVTDLVDVNSLGSFQIAAGDIIAIPLAACSSDNLNLPSNSDLLVANGSYAVTADHCVQCS

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAAATATTGGGCAGTCCGTTGTGACCTTCTTCCCTGTTTCTGTTTCAATGGCACAGACAATGGTTTTCCCGCTGTGTATATGTCGTATGCTGTACGGTCCGGGGATAGTTTGGCCAGCATTGCGATGTCATATGGCACAACTGTTACAGATCTCGTGGATGTGAATTCCTTGGGAAGCTTCCAGATTGCAGCAGGAGACATTATTGCAATACCACTGGCAGCCTGCTCATCAGACAATTTGAATTTGCCTTCAAATAGTGATCTACTTGTAGCAAATGGAAGCTATGCTGTTACTGCTGATCATTGTGTGCAATGCAGCT

Fln Alignment:

AllPine_a_c97347___LPCFCFNGTDNGFPAVYMSYAVRSGDSLASIAMSYGTTVTDLVDVNSLGSFQIAAGDIIAIPLAACXXXXXXXXXXXXXXVANGSYAVTADHCVQCS
Q93ZH0-2______________LPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain