SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138549

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene138549
CGTCGTGACCTTGGCTGTCACTCAATTTCTCCAAGTTGAATGGCGAAGAGCAATACTCCGAGATTTTCTCTGTAGGAGGTCATGTTTGGCGTGTGTTAATATATCCCAAAGGGACAAGGTGGACCACCTGTCTATTTACTTAGATGTGGCAGATTCTACCACATTACCAAAGGGCTGGAGCAGATATGTTTCTTTCATTTTGGCTGTTGTCAATCAGAATCGTCCAAAGCTCACCATCAAGCATGGTATGCCGTAATTGCTTTGTAGTGAAGGCATTTGT

Ace file of the UniGene sp_v3.0_unigene138549

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]	-	-	2.0e-15	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00002647001; PHYPADRAFT_180457; PHYPADRAFT_216093; POPTRDRAFT_256091; POPTRDRAFT_561195;

Source	GOs	Term	Type	e value	Identity
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	0.0	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06600.1	UBP12 ubiquitin-specific protease 12 chr5:2019545-2027834 REVERSE LENGTH=1116	1.0e-17	58%
RefSeq	Arabidopsis thaliana	NP_568171.1	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana]	2.0e-17	58%
RefSeq	Populus trichocarpa	XP_002309275.1	predicted protein [Populus trichocarpa]	5.0e-19	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSM8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 113 and 113, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 85 - 123

Fln protein: S*PWLSLNFSKLNGEEQYSEIFSVGGHVWRVLIYPKxxKVDHLSIYLDVADSTTLPKGWSRYVSFILAVVNQNRPKLTIKHGMP*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTCCAAGTTGAATGGCGAAGAGCAATACTCCGAGATTTTCTCTGTAGGAGGTCATGTTTGGCGTGTGTTAATATATCCCAAAxxxxxxAAGGTGGACCACCTGTCTATTTACTTAGATGTGGCAGATTCTACCACATTACCAAAGGGCTGGAGCAGATATGTTTCTTTCATTTTGGCTGTTGTCAATCAGAATCGTCCAAAGCTCACCATCAAGCATGGTATGCCGTAATTGCTTTGTAGTGAAGGCATTTGT

Fln Alignment:

AllPine_a_c97301___WLSLNFSKLNGEEQYSEIFSVGGHVWRVLIYPKGDKVDHLSIYLDVADSTTLPKGWSRYVSFILAVVNQNRPKLTIKHGMP
A9NSM8________________WAIEHFSSLDAERHYSDIFTVGGHKWRLLIFPKGNNVDYLSIYLDVPDSATLPHGCSKYAEFSLAVVNLTDPQLTIRKGIP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain