SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138454

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene138454
GTGCTGAATGACGTGGAAGAGGAACAGATGGAAAATATTCTGTGTTACCACAGTGAGAAACTAGCAATTGCATTTGGTCTTCTCAACACACCTACTGGCACACCCATTCGGATCATCAAAAATCTTCGTGCATGCGGTGATTGCCACTCTGCTACAAAGTTCATCTCCAAGATTGTTGGAAGAGAAAT

Ace file of the UniGene sp_v3.0_unigene138454

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	1.0e-23	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g20230; At2g22070; At3g03580; At3g12770; At3g57430; At4g33170; At4g33990; EMB2758; F17I5.180; F4I10.100; GSVIVT00000307001; GSVIVT00000887001; GSVIVT00002188001; GSVIVT00005426001; GSVIVT00006467001; GSVIVT00006516001; GSVIVT00006945001; GSVIVT00010543

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:15995701-15998673 REVERSE LENGTH=990	4.0e-23	68%
RefSeq	Arabidopsis thaliana	NP_195043.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-23	68%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	3.0e-24	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 62 - 370

Fln protein: VLNDVEEEQMENILCYHSEKLAIAFGLLNTPTGTPIRIIKNLRACGDCHSATKFISKIVGRE

Protein Length: 63

Fln nts: GTGCTGAATGACGTGGAAGAGGAACAGATGGAAAATATTCTGTGTTACCACAGTGAGAAACTAGCAATTGCATTTGGTCTTCTCAACACACCTACTGGCACACCCATTCGGATCATCAAAAATCTTCGTGCATGCGGTGATTGCCACTCTGCTACAAAGTTCATCTCCAAGATTGTTGGAAGAGAAAT

Fln Alignment:

AllPine_a_rep_c97167___VLNDVEEEQMENILCYHSEKLAIAFGLLNTPTGTPIRIIKNLRACGDCHSATKFISKIVGRE
A9P0W0________________VLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain