SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene138166

Length: 439 nt

UniGene Fasta

>sp_v3.0_unigene138166
CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Ace file of the UniGene sp_v3.0_unigene138166

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal tolerance protein 11 n=9 Tax=Brassicaceae RepID=MTP11_ARATH	-	-	2.0e-15	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Metal tolerance protein	-	-	3.682e-11	-

Source	Gene names
Sma3	AT2G39450; At2g39450; GSVIVT00029533001; MTP11.1; MTP11.2; Os01g0837800; OsI_04357; OsJ_04008; P0031D11.3; POPTRDRAFT_563840; POPTRDRAFT_765710; POPTRDRAFT_833834; PtrMTP11.1; PtrMTP11.2; PtrMTP9; RCOM_0152430;

Source	GOs	Term	Type	Identity
Sma3	late endosome	GO:0005770	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	-
Sma3	cation transmembrane transporter activity	GO:0008324	Molecular Function	-
Sma3	manganese:hydrogen antiporter activity	GO:0010486	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	response to manganese ion	GO:0010042	Biological Process	-
Sma3	cellular manganese ion homeostasis	GO:0030026	Biological Process	-
Sma3	response to copper ion	GO:0046688	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation efflux protein	IPR002524	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39450.1	MTP11, ATMTP11 Cation efflux family protein chr2:16471744-16473735 REVERSE LENGTH=394	8.0e-20	68%
RefSeq	Arabidopsis thaliana	NP_181477.1	putative Mn-specific cation diffusion facilitator transporter [Arabidopsis thaliana]	1.0e-19	68%
RefSeq	Populus trichocarpa	XP_002315072.1	metal tolerance protein [Populus trichocarpa]	5.0e-18	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTR8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 65 - 401

Fln protein: ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIVEQNMWA*

Protein Length: 66

Fln nts: CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Fln Alignment:

AllPine_a_rep_c96679___ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIV
A9NTR8________________VTLVKLFLVLYCRSFTNEIVKAFAQDHFFDVITNSIGLIAAILASTLYWWIDPAGAIV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain