SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137956

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene137956
CAAGGTGCTCCGCTCTGCCGACGCTTCCGGACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCAACTTGTCCGAGTGCGACTATCTGCAGGCGCTTCCGGACTCGGTTGGGAACCTAGCACGCCTCGAACATCTGGACTTAAGCTACTGCTCGGATCTGCAGAGGCTTCCGGACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTACTCTTTGGAGATGCTTCCGTCCTCGGTTGGGAACCTAGCACGCCTCCAACATCTGGCTTTGGGACGGTGTTCCTCTCTGCATACCCTCCCACACTCAGTTGGGGAT

Ace file of the UniGene sp_v3.0_unigene137956

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	2.0e-27	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Disease resistance protein (TIR-NBS-LRR class), putative	-	-	3.464e-08	-

Source	Gene names
Sma3	At1g69550; At2g14080; At3g04220; At5g11250; F10D13_24; F2I11_140; Os01g0260500; OsI_01261; OsI_30909; OsJ_01178; OsJ_28895; P0699D11.16; PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_136879; PHYPADRAFT_145827; PHYPADRAFT_148; PHYPADRAFT_157249; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Protein of unknown function DUF220	IPR003863	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	3.0e-31	57%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	4.0e-31	57%
RefSeq	Populus trichocarpa	XP_002337069.1	predicted protein, partial [Populus trichocarpa]	3.0e-27	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 110 - 1071

Fln protein: RCSALPTLPDSVGNLARLQHLNLSECDYLQALPDSVGNLARLEHLDLSYCSDLQRLPDSVGNLARLQHLDLSHCYSLEMLPSSVGNLARLQHLALGRCSSLHTLPHSVGD

Protein Length: 111

Fln nts: CAAGGTGCTCCGCTCTGCCGACGCTTCCGGACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCAACTTGTCCGAGTGCGACTATCTGCAGGCGCTTCCGGACTCGGTTGGGAACCTAGCACGCCTCGAACATCTGGACTTAAGCTACTGCTCGGATCTGCAGAGGCTTCCGGACTCGGTTGGTAACCTAGCACGCCTCCAACATCTCGACTTGTCCCATTGCTACTCTTTGGAGATGCTTCCGTCCTCGGTTGGGAACCTAGCACGCCTCCAACATCTGGCTTTGGGACGGTGTTCCTCTCTGCATACCCTCCCACACTCAGTTGGGGAT

Fln Alignment:

AllPine_a_rep_c96300___RCSALPTLPDSVGNLARLQHLNLSECDYLQALPDSVGNLARLEHLDLSYCSDLQRLPDSVGNLARLQHLDLSHCYSLEMLPSSVGNLARLQHLALGRCSSLHTLPHSVGD
C0PQE2________________RCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLKSLQTLDLDGCSTLQTLPDSVGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain