SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137575

Length: 235 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene137575
CGTCGTGACCTTGGCTGTCACTCAGGTCGTCGCATGGGTCATGCCGGAGCAATTATATCTGGAGGAAAGGGTACAGCCCAAGACAAAATTCAGATCTTACGAGAAGCAGGAGTCACAGTTGTTGAATCTCCAGCAAAAATCGGCACAAGTATTTTAGAAGTGTTCAAGCAGCGAAACGATTTAGGTTTGATAATAGACAGGCTCCATAACAGTCCATTTTGGTAGTCAACTCCAT

Ace file of the UniGene sp_v3.0_unigene137575 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial; AltName: Full=Succinyl-CoA synthetase subunit alpha; Short=SCS-alpha; Flags: Precursor dbj\|BAC83073.1\| putative succinyl-CoA ligase alpha subunit [Oryza sativa Japonica	-	-	5.0e-17	81%
FL-Next	sp=Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Sma3	Succinate--CoA ligase (GDP-forming).	EC:6.2.1.4	-	1.249e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	1.249e-16	%
Sma3	Propanoate metabolism	00640	1.249e-16	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.249e-16	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.249e-16	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.249e-16	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.249e-16	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.249e-16	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.249e-16	%
Sma3	Biosynthesis of plant hormones	01070	1.249e-16	%
Sma3	Metabolic pathways	01100	1.249e-16	%
Sma3	Biosynthesis of secondary metabolites	01110	1.249e-16	%

Source	Gene names
Sma3	At5g08300; At5g23250; CHLREDRAFT_196570; F8L15_30; GSVIVT00031891001; GSVIVT00037069001; MICPUCDRAFT_45127; MICPUN_54789; MKD15.11; OSTLU_30915; Os07g0577700; OsI_26601; OsJ_24862; Ot03g05850; PHATRDRAFT_42015; PHYPADRAFT_148732; PHYPADRAFT_209911; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ATP citrate synthase activity	GO:0003878	Molecular Function	-
Sma3	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	-
Sma3	succinate-CoA ligase (GDP-forming) activity	GO:0004776	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	CoA-binding	IPR003781	-	-
Sma3	Succinyl-CoA ligase, alpha subunit	IPR005810	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase	IPR005811	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Succinyl-CoA synthetase-like	IPR016102	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase, active site	IPR017440	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23250.1	Succinyl-CoA ligase, alpha subunit chr5:7830460-7832491 FORWARD LENGTH=341	7.0e-20	76%
RefSeq	Arabidopsis thaliana	NP_197716.1	Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana]	9.0e-20	76%
RefSeq	Populus trichocarpa	XP_002318347.1	predicted protein, partial [Populus trichocarpa]	8.0e-23	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6ZL94

Fln msg: your sequence is shorter than subject: 75 - 331

Fln protein: RRDLGCHSGRRMGHAGAIISGGKGTAQDKIQILREAGVTVVESPAKIGTSILEVFKQRNDLGLIIDRLHNSPFW*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCGTCGCATGGGTCATGCCGGAGCAATTATATCTGGAGGAAAGGGTACAGCCCAAGACAAAATTCAGATCTTACGAGAAGCAGGAGTCACAGTTGTTGAATCTCCAGCAAAAATCGGCACAAGTATTTTAGAAGTGTTCAAGCAGCGAAACGATTTAGGTTTGATAATAGACAGGCTCCATAACAGTCCATTTTGGTAG___TCAACTCCAT

Fln Alignment:

AllPine_a_rep_c95509___GRRMGHAGAIISGGKGTAQDKIQILREAGVTVVESPAKIGTSILEVFKQRNDL
Q6ZL94________________GRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain