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UniGene Name: sp_v3.0_unigene137531
Length: 242 nt
 UniGene Fasta
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| >sp_v3.0_unigene137531
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Ace file of the UniGene sp_v3.0_unigene137531
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If you push the Download ace button, you will download an ace file of this UniGene.
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Go to the Tablet ACE viewer Web
| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Extensin_2 multi-domain protein | - | - | 4.0e-21 | 61% |
| Sma3 | Extensin | - | - | 1.764e-39 | - |
| Source | Gene names |
|---|---|
| Sma3 | 31.t00041; 31.t00042; AT4g08380; AT4g08400; AT4g08410; AT4g13340; AcExt1; At1g12040; At1g21310; At1g26240; At1g26250; At1g76930; At2g24980; At2g43150; At3g54580; At3g54590; At4g08380; At4g08400; At4g08410; At4g13340; At5g49080; B1103C09.1-1; Dif10; Dif54; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | extracellular region | GO:0005576 | Cellular Component | 0.0 | - |
| Sma3 | extracellular space | GO:0005615 | Cellular Component | 0.0 | - |
| Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
| Sma3 | plant-type cell wall | GO:0009505 | Cellular Component | 0.0 | - |
| Sma3 | outer membrane | GO:0019867 | Cellular Component | 0.0 | - |
| Sma3 | metalloendopeptidase activity | GO:0004222 | Molecular Function | 0.0 | - |
| Sma3 | structural constituent of cell wall | GO:0005199 | Molecular Function | 0.0 | - |
| Sma3 | calcium ion binding | GO:0005509 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | sugar binding | GO:0005529 | Molecular Function | 0.0 | - |
| Sma3 | chitin binding | GO:0008061 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | nutrient reservoir activity | GO:0045735 | Molecular Function | 0.0 | - |
| Sma3 | cell morphogenesis involved in differentiation | GO:0000904 | Biological Process | 0.0 | - |
| Sma3 | defense response | GO:0006952 | Biological Process | 0.0 | - |
| Sma3 | response to wounding | GO:0009611 | Biological Process | 0.0 | - |
| Sma3 | plant-type cell wall organization | GO:0009664 | Biological Process | 0.0 | - |
| Sma3 | response to abscisic acid stimulus | GO:0009737 | Biological Process | 0.0 | - |
| Sma3 | response to salicylic acid stimulus | GO:0009751 | Biological Process | 0.0 | - |
| Sma3 | response to jasmonic acid stimulus | GO:0009753 | Biological Process | 0.0 | - |
| Sma3 | unidimensional cell growth | GO:0009826 | Biological Process | 0.0 | - |
| Sma3 | trichoblast differentiation | GO:0010054 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Chitin-binding, type 1 | IPR001002 | - | 0.0 | - |
| Sma3 | Leucine-rich repeat | IPR001611 | - | 0.0 | - |
| Sma3 | Protein phosphatase 2C-like | IPR001932 | - | 0.0 | - |
| Sma3 | Pistil-specific extensin-like protein | IPR003882 | - | 0.0 | - |
| Sma3 | Repetitive proline-rich cell wall protein repeat | IPR003883 | - | 0.0 | - |
| Sma3 | Pollen Ole e 1 allergen/extensin | IPR006041 | - | 0.0 | - |
| Sma3 | Outer membrane autotransporter barrel | IPR006315 | - | 0.0 | - |
| Sma3 | Extensin repeat | IPR006706 | - | 0.0 | - |
| Sma3 | Leucine-rich repeat-containing N-terminal, type 2 | IPR013210 | - | 0.0 | - |
| Sma3 | Peptidase M10B, serralysin, C-terminal | IPR013858 | - | 0.0 | - |
| Sma3 | Chitin-binding, type 1, conserved site | IPR018371 | - | 0.0 | - |
| Full-Lengther Next Prediction |
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Fln status: coding
Fln database: testcode
Fln msg:
Test code: 1
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
