SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137311

Length: 515 nt

UniGene Fasta

>sp_v3.0_unigene137311
AATGTATAATCTGTTTAGTGGCTCTTCGAAGGGCGTGGACATTGTTGAGTTAGAAGGACACTTTGAAACGGTTGATCAGACTGTTGTTGACAGGAACAATGTGCTTGGGATGGCGCTTAAGTCAACCGTTGCTCGTGTCACAGTCCAGGGTAACGGAACCACTTGGGCCGTAGATTTTAATCCCTTTCTGCTCTTTCCCAACCGTATTCAACATGTTCAGTATTCTTTCTATACATTAGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAGACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATAAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTAGT

Ace file of the UniGene sp_v3.0_unigene137311

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	6.0e-28	56%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%

Source	Gene names
Sma3	At4g20050; F18F4.150; GSVIVT00029641001; GSVIVT00030119001; OSJNBa0070C17.16; Os04g0613200; OsI_17366; OsJ_16135; PHYPADRAFT_198113; PHYPADRAFT_227125; POPTRDRAFT_553848; POPTRDRAFT_588705; POPTRDRAFT_676368; POPTRDRAFT_854014; POPTRDRAFT_948016; QRT3; RC

Source	GOs	Term	Type	e value	Identity
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	0.0	-
Sma3	microsporogenesis	GO:0009556	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G20050.1	QRT3 Pectin lyase-like superfamily protein chr4:10849911-10852090 REVERSE LENGTH=481	3.0e-34	56%
RefSeq	Arabidopsis thaliana	NP_001078410.1	Polygalacturonase QRT3 [Arabidopsis thaliana]	4.0e-34	56%
RefSeq	Populus trichocarpa	XP_002303344.1	predicted protein [Populus trichocarpa]	2.0e-40	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: your sequence is shorter than subject: 127 - 481

Fln protein: MYNLFSGSSKGVDIVELEGHFETVDQTVVDRNNVLGMALKSTVARVTVQGNGTTWAVDFNPFLLFPNRIQHVQYSFYTLDALFPRHALRNVSENKVVIEADTQVSATIAVQVDQSATFAQGSGIYS*

Protein Length: 128

Fln nts: AATGTATAATCTGTTTAGTGGCTCTTCGAAGGGCGTGGACATTGTTGAGTTAGAAGGACACTTTGAAACGGTTGATCAGACTGTTGTTGACAGGAACAATGTGCTTGGGATGGCGCTTAAGTCAACCGTTGCTCGTGTCACAGTCCAGGGTAACGGAACCACTTGGGCCGTAGATTTTAATCCCTTTCTGCTCTTTCCCAACCGTATTCAACATGTTCAGTATTCTTTCTATACATTAGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAG___ACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATAAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTAGT

Fln Alignment:

AllPine_a_rep_c94994___NLFSGSSKGVDIVELEGH---FETVDQTVVDRNNVLGMALKSTVARVTVQGNGTTWAVDFNPFLLFPNRIQHVQYSFYTLDA-LFPRHALRNVSENKVVIEADTQVSATIAVQVDQ
O49432________________NMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
167		33	66		0.997459
169		66		33	0.997458
182			33	66	0.997476
184		66		33	0.997476
193	33			66	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain