SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene137290

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene137290
AATGTTTTGTGTTGCATGATTTGGAGGAGGAGCACAAGGAAATGTTCTCTGCTATCATAGTGAGAAGCTGGCCATTGCATTTGGGATTATTAGTACACCTCCAGGATCATCAATAAGAATTGTGAAAAACCTTCGGGCATGTGGTGATTAGCCACAATGCCATAAAGTTCATCTACATT

Ace file of the UniGene sp_v3.0_unigene137290

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	1.0e-11	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At5g48910; GSVIVT00013497001; GSVIVT00024670001; GSVIVT00026251001; GSVIVT00036603001; GSVIVT00038549001; GSVIVT00038824001; K19E20.2; LOC_Os12g17080; MtrDRAFT_AC157502g25v2; OGR1; OJ1199_H01.113; OSJNBa0026C08.21; Os12g0270200; OsI_19008; OsI_26611; OsI_

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:17485668-17486387 FORWARD LENGTH=239	4.0e-13	63%
RefSeq	Arabidopsis thaliana	NP_175189.2	putative lipoyltransferase [Arabidopsis thaliana]	5.0e-13	63%
RefSeq	Populus trichocarpa	XP_002316137.1	predicted protein [Populus trichocarpa]	3.0e-12	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 31 aas, your sequence is shorter than subject: 50 - 370

Fln protein: MFCVA*FGGGAQGNVLCYHSEKLAIAFGIISTPPGSSIRIVKNLRACGD*

Protein Length: 51

Fln nts: AATGTTTTGTGTTGCATGATTTGGAGGAGGAGCACAAGGAAATGTTCTCTGCTATCATAGTGAGAAGCTGGCCATTGCATTTGGGATTATTAGTACACCTCCAGGATCATCAATAAGAATTGTGAAAAACCTTCGGGCATGTGGTGATTAGCCACAATGCCATAAAGTTCATCTACATT

Fln Alignment:

AllPine_a_rep_c94944___VLCYHSEKLAIAFGIISTPPGSSIRIVKNLRACGD*PQCH
A9P0W0________________ILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGD---CH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain